de.mpg.biochem.mars.image

Class DNASegment

java.lang.Object

de.mpg.biochem.mars.image.DNASegment

All Implemented Interfaces:

net.imglib2.EuclideanSpace, net.imglib2.RealLocalizable

public class DNASegment
extends java.lang.Object
implements net.imglib2.RealLocalizable

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	INTENSITY_VARIANCE
static java.lang.String	LENGTH
static java.lang.String	MEDIAN_INTENSITY
static java.lang.String	X1
static java.lang.String	X2
static java.lang.String	Y1
static java.lang.String	Y2

Constructor Summary

Constructors

Constructor and Description
DNASegment(double x1, double y1, double x2, double y2)

Method Summary

Modifier and Type	Method and Description
double	getDoublePosition(int arg0)
float	getFloatPosition(int arg0)
double	getLength()
int	getMedianIntensity()
double	getPositionOnDNA(double x, double y, double DNALength)
double	getVariance()
double	getX1()
double	getX2()
double	getXCenter()
double	getY1()
double	getY2()
double	getYCenter()
void	localize(double[] arg0)
void	localize(float[] arg0)
int	numDimensions()
void	setMedianIntensity(int medianIntensity)
void	setVariance(double variance)
void	setX1(double x1)
void	setX2(double x2)
void	setY1(double y1)
void	setY2(double y2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.RealLocalizable

localize, positionAsDoubleArray, positionAsRealPoint

Field Detail

X1

public static final java.lang.String X1

See Also:

Constant Field Values

Y1

public static final java.lang.String Y1

See Also:

Constant Field Values

X2

public static final java.lang.String X2

See Also:

Constant Field Values

Y2

public static final java.lang.String Y2

See Also:

Constant Field Values

MEDIAN_INTENSITY

public static final java.lang.String MEDIAN_INTENSITY

See Also:

Constant Field Values

INTENSITY_VARIANCE

public static final java.lang.String INTENSITY_VARIANCE

See Also:

Constant Field Values

LENGTH

public static final java.lang.String LENGTH

See Also:

Constant Field Values

Constructor Detail

DNASegment

public DNASegment(double x1,
                  double y1,
                  double x2,
                  double y2)

Method Detail

getX1

public double getX1()

getY1

public double getY1()

getX2

public double getX2()

getY2

public double getY2()

getXCenter

public double getXCenter()

getYCenter

public double getYCenter()

setX1

public void setX1(double x1)

setY1

public void setY1(double y1)

setX2

public void setX2(double x2)

setY2

public void setY2(double y2)

getLength

public double getLength()

getPositionOnDNA

public double getPositionOnDNA(double x,
                               double y,
                               double DNALength)

setMedianIntensity

public void setMedianIntensity(int medianIntensity)

getMedianIntensity

public int getMedianIntensity()

setVariance

public void setVariance(double variance)

getVariance

public double getVariance()

numDimensions

public int numDimensions()

Specified by:

numDimensions in interface net.imglib2.EuclideanSpace

getDoublePosition

public double getDoublePosition(int arg0)

Specified by:

getDoublePosition in interface net.imglib2.RealLocalizable

getFloatPosition

public float getFloatPosition(int arg0)

Specified by:

getFloatPosition in interface net.imglib2.RealLocalizable

localize

public void localize(float[] arg0)

Specified by:

localize in interface net.imglib2.RealLocalizable

localize

public void localize(double[] arg0)

Specified by:

localize in interface net.imglib2.RealLocalizable