de.mpg.biochem.mars.metadata

Class MarsBdvSource

java.lang.Object

de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord

de.mpg.biochem.mars.metadata.MarsBdvSource

All Implemented Interfaces:

JsonConvertibleRecord

public class MarsBdvSource
extends AbstractJsonConvertibleRecord
implements JsonConvertibleRecord

Constructor Summary

Constructors

Constructor and Description
MarsBdvSource(com.fasterxml.jackson.core.JsonParser jParser)
MarsBdvSource(java.lang.String name)

Method Summary

Modifier and Type	Method and Description
protected void	createIOMaps() Must be implemented in subclasses to define how fields, objects, arrays should be saved based on the Jackson streaming API.
net.imglib2.realtransform.AffineTransform3D	getAffineTransform3D()
net.imglib2.realtransform.AffineTransform3D	getAffineTransform3D(double dX, double dY)
int	getChannel()
boolean	getCorrectDrift()
java.lang.String	getN5Dataset()
java.lang.String	getName()
java.lang.String	getPath()
java.util.Map<java.lang.String,java.lang.String>	getProperties()
int	getSingleTimePoint()
boolean	getSingleTimePointMode()
boolean	isN5()
void	setAffineTransform2D(double m00, double m01, double m02, double m10, double m11, double m12)
void	setChannel(int channel)
void	setCorrectDrift(boolean driftCorrect)
void	setN5(boolean isN5)
void	setN5Dataset(java.lang.String n5Dataset)
void	setName(java.lang.String name)
void	setPath(java.lang.String path)
void	setProperty(java.lang.String name, java.lang.String value)
void	setSingleTimePoint(int singleTimePoint)
void	setSingleTimePointMode(boolean singleTimePointMode)

Methods inherited from class de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord

dumpJSON, fromJSON, getJsonGenerator, getJsonParser, setJsonField, setShowWarnings, toJSON

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.mpg.biochem.mars.molecule.JsonConvertibleRecord

dumpJSON, fromJSON, getJsonGenerator, getJsonParser, setJsonField, setShowWarnings, toJSON

Constructor Detail

MarsBdvSource

public MarsBdvSource(java.lang.String name)

MarsBdvSource

public MarsBdvSource(com.fasterxml.jackson.core.JsonParser jParser)
              throws java.io.IOException

Throws:

java.io.IOException

Method Detail

createIOMaps

protected void createIOMaps()

Description copied from class: AbstractJsonConvertibleRecord

Must be implemented in subclasses to define how fields, objects, arrays should be saved based on the Jackson streaming API.

Specified by:

createIOMaps in class AbstractJsonConvertibleRecord

getName

public java.lang.String getName()

setName

public void setName(java.lang.String name)

getPath

public java.lang.String getPath()

setPath

public void setPath(java.lang.String path)

getCorrectDrift

public boolean getCorrectDrift()

setCorrectDrift

public void setCorrectDrift(boolean driftCorrect)

isN5

public boolean isN5()

setN5

public void setN5(boolean isN5)

getChannel

public int getChannel()

setChannel

public void setChannel(int channel)

setSingleTimePointMode

public void setSingleTimePointMode(boolean singleTimePointMode)

getSingleTimePointMode

public boolean getSingleTimePointMode()

getSingleTimePoint

public int getSingleTimePoint()

setSingleTimePoint

public void setSingleTimePoint(int singleTimePoint)

setN5Dataset

public void setN5Dataset(java.lang.String n5Dataset)

getN5Dataset

public java.lang.String getN5Dataset()

getProperties

public java.util.Map<java.lang.String,java.lang.String> getProperties()

setProperty

public void setProperty(java.lang.String name,
                        java.lang.String value)

setAffineTransform2D

public void setAffineTransform2D(double m00,
                                 double m01,
                                 double m02,
                                 double m10,
                                 double m11,
                                 double m12)

getAffineTransform3D

public net.imglib2.realtransform.AffineTransform3D getAffineTransform3D()

getAffineTransform3D

public net.imglib2.realtransform.AffineTransform3D getAffineTransform3D(double dX,
                                                                        double dY)