de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector

Class MoleculeArchiveTreeNode

java.lang.Object

de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

Direct Known Subclasses:

MoleculeArchiveSwingTreeNode

public class MoleculeArchiveTreeNode
extends java.lang.Object

A node representing a dataset or group in a container and child nodes if any exist.

Constructor Summary

Constructors

Constructor and Description
MoleculeArchiveTreeNode(java.lang.String path)

Method Summary

Modifier and Type	Method and Description
void	add(MoleculeArchiveTreeNode child) Adds a node as a child of this node.
MoleculeArchiveTreeNode	addPath(java.lang.String path) Adds a node at the specified full path and any parent nodes along the path, if they do not already exist.
MoleculeArchiveTreeNode	addPath(java.lang.String path, java.util.function.Function<java.lang.String,MoleculeArchiveTreeNode> constructor) Adds a node at the specified full path and any parent nodes along the path, if they do not already exist.
java.util.List<MoleculeArchiveTreeNode>	childrenList()
static java.util.stream.Stream<MoleculeArchiveTreeNode>	flattenTree(MoleculeArchiveTreeNode root)
static void	fromFlatList(MoleculeArchiveTreeNode root, java.lang.String[] pathList, java.lang.String groupSeparator) Generates a tree based on the output of MoleculeArchiveStorage.deepList(java.lang.String, java.util.function.Predicate<java.lang.String>), returning the root node.
static MoleculeArchiveTreeNode	fromFlatList(java.lang.String base, java.lang.String[] pathList, java.lang.String groupSeparator) Generates a tree based on the output of MoleculeArchiveStorage.deepList(java.lang.String, java.util.function.Predicate<java.lang.String>), returning the root node.
java.util.Optional<MoleculeArchiveTreeNode>	getDescendant(java.lang.String path)
java.util.stream.Stream<MoleculeArchiveTreeNode>	getDescendants(java.util.function.Predicate<MoleculeArchiveTreeNode> filter)
java.lang.String	getNodeName()
java.lang.String	getParentPath()
java.lang.String	getPath()
java.lang.String	printRecursive()
void	remove(MoleculeArchiveTreeNode child)
void	removeAllChildren()
protected static java.lang.String	removeLeadingSlash(java.lang.String pathName) Removes the leading slash from a given path and returns the corrected path.
boolean	structureEquals(MoleculeArchiveTreeNode other)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MoleculeArchiveTreeNode

public MoleculeArchiveTreeNode(java.lang.String path)

Method Detail

flattenTree

public static java.util.stream.Stream<MoleculeArchiveTreeNode> flattenTree(MoleculeArchiveTreeNode root)

getNodeName

public java.lang.String getNodeName()

getParentPath

public java.lang.String getParentPath()

add

public void add(MoleculeArchiveTreeNode child)

Adds a node as a child of this node.

Parameters:

child - the child node

remove

public void remove(MoleculeArchiveTreeNode child)

removeAllChildren

public void removeAllChildren()

childrenList

public java.util.List<MoleculeArchiveTreeNode> childrenList()

getDescendant

public java.util.Optional<MoleculeArchiveTreeNode> getDescendant(java.lang.String path)

addPath

public MoleculeArchiveTreeNode addPath(java.lang.String path)

Adds a node at the specified full path and any parent nodes along the path, if they do not already exist. Returns the node at the specified path.

Parameters:

path - the full path to node

Returns:

the node

addPath

public MoleculeArchiveTreeNode addPath(java.lang.String path,
                                       java.util.function.Function<java.lang.String,MoleculeArchiveTreeNode> constructor)

Adds a node at the specified full path and any parent nodes along the path, if they do not already exist. Returns the node at the specified path.

Parameters:

path - the full path to node

constructor - function creating a node from a path

Returns:

the node

getDescendants

public java.util.stream.Stream<MoleculeArchiveTreeNode> getDescendants(java.util.function.Predicate<MoleculeArchiveTreeNode> filter)

getPath

public java.lang.String getPath()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

structureEquals

public boolean structureEquals(MoleculeArchiveTreeNode other)

printRecursive

public java.lang.String printRecursive()

fromFlatList

public static MoleculeArchiveTreeNode fromFlatList(java.lang.String base,
                                                   java.lang.String[] pathList,
                                                   java.lang.String groupSeparator)

Generates a tree based on the output of MoleculeArchiveStorage.deepList(java.lang.String, java.util.function.Predicate<java.lang.String>), returning the root node.

Parameters:

base - the path used to call deepList

pathList - the output of deepList

groupSeparator - the n5 group separator

Returns:

the root node

fromFlatList

public static void fromFlatList(MoleculeArchiveTreeNode root,
                                java.lang.String[] pathList,
                                java.lang.String groupSeparator)

Generates a tree based on the output of MoleculeArchiveStorage.deepList(java.lang.String, java.util.function.Predicate<java.lang.String>), returning the root node.

Parameters:

root - the root node corresponding to the base

pathList - the output of deepList

groupSeparator - the n5 group separator

removeLeadingSlash

protected static java.lang.String removeLeadingSlash(java.lang.String pathName)

Removes the leading slash from a given path and returns the corrected path. It ensures correctness on both Unix and Windows, otherwise pathName is treated as UNC path on Windows, and Paths.get(pathName, ...) fails with InvalidPathException.

Parameters:

pathName - the path

Returns:

the corrected path