de.mpg.biochem.mars.metadata

Class MarsOMEPlane

java.lang.Object

de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord

de.mpg.biochem.mars.metadata.MarsOMEPlane

All Implemented Interfaces:

GenericModel, JsonConvertibleRecord

public class MarsOMEPlane
extends AbstractJsonConvertibleRecord
implements GenericModel

Constructor Summary

Constructors

Constructor and Description
MarsOMEPlane()
MarsOMEPlane(com.fasterxml.jackson.core.JsonParser jParser, MarsOMEImage image)
MarsOMEPlane(MarsOMEImage image, int imageIndex, int planeIndex, ome.xml.model.primitives.NonNegativeInteger Z, ome.xml.model.primitives.NonNegativeInteger C, ome.xml.model.primitives.NonNegativeInteger T)
MarsOMEPlane(MarsOMEImage image, ome.xml.meta.OMEXMLMetadata md, int imageIndex, int planeIndex)

Method Summary

Modifier and Type	Method and Description
protected void	createIOMaps() Must be implemented in subclasses to define how fields, objects, arrays should be saved based on the Jackson streaming API.
int	getC()
double	getDeltaTinSeconds()
double	getExposureTimeInSeconds()
double	getField(java.lang.String field)
java.util.Map<java.lang.String,java.lang.Double>	getFields()
java.lang.String	getFilename()
int	getIFD()
MarsOMEImage	getImage()
int	getImageID()
java.lang.Iterable<java.util.List<java.lang.String>>	getInformationsRow()
int	getPlaneIndex()
double	getPosX()
double	getPosY()
double	getPosZ()
java.lang.String	getStringField(java.lang.String field)
java.util.Map<java.lang.String,java.lang.String>	getStringFields()
int	getT()
java.lang.String	getUUID()
double	getXDrift()
double	getYDrift()
int	getZ()
double	getZDrift()
boolean	hasField(java.lang.String field)
boolean	hasStringField(java.lang.String field)
void	setC(ome.xml.model.primitives.NonNegativeInteger c)
void	setDeltaT(ome.units.quantity.Time dt)
void	setExposureTime(ome.units.quantity.Time exposureTime)
void	setField(java.lang.String field, double value)
void	setFields(java.util.Map<java.lang.String,java.lang.Double> valueFields)
void	setFilename(java.lang.String filename)
void	setIFD(ome.xml.model.primitives.NonNegativeInteger ifd)
void	setImage(MarsOMEImage image)
void	setImageID(int imageID)
void	setPlaneIndex(int planeIndex)
void	setPosX(float posX)
void	setPosY(float posY)
void	setPosZ(float posZ)
void	setStringField(java.lang.String field, java.lang.String value)
void	setStringFields(java.util.Map<java.lang.String,java.lang.String> stringFields)
void	setT(ome.xml.model.primitives.NonNegativeInteger t)
void	setUUID(java.lang.String uuid)
void	setXDrift(double xDrift)
void	setYDrift(double yDrift)
void	setZ(ome.xml.model.primitives.NonNegativeInteger z)
void	setZDrift(double zDrift)
java.lang.String	toString()

Methods inherited from class de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord

dumpJSON, fromJSON, getJsonGenerator, getJsonParser, setJsonField, setShowWarnings, toJSON

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MarsOMEPlane

public MarsOMEPlane()

MarsOMEPlane

public MarsOMEPlane(MarsOMEImage image,
                    ome.xml.meta.OMEXMLMetadata md,
                    int imageIndex,
                    int planeIndex)

MarsOMEPlane

public MarsOMEPlane(MarsOMEImage image,
                    int imageIndex,
                    int planeIndex,
                    ome.xml.model.primitives.NonNegativeInteger Z,
                    ome.xml.model.primitives.NonNegativeInteger C,
                    ome.xml.model.primitives.NonNegativeInteger T)

MarsOMEPlane

public MarsOMEPlane(com.fasterxml.jackson.core.JsonParser jParser,
                    MarsOMEImage image)
             throws java.io.IOException

Throws:

java.io.IOException

Method Detail

createIOMaps

protected void createIOMaps()

Description copied from class: AbstractJsonConvertibleRecord

Must be implemented in subclasses to define how fields, objects, arrays should be saved based on the Jackson streaming API.

Specified by:

createIOMaps in class AbstractJsonConvertibleRecord

toString

public java.lang.String toString()

Specified by:

toString in interface GenericModel

Overrides:

toString in class java.lang.Object

getInformationsRow

public java.lang.Iterable<java.util.List<java.lang.String>> getInformationsRow()

Specified by:

getInformationsRow in interface GenericModel

setField

public void setField(java.lang.String field,
                     double value)

getField

public double getField(java.lang.String field)

hasField

public boolean hasField(java.lang.String field)

setFields

public void setFields(java.util.Map<java.lang.String,java.lang.Double> valueFields)

getFields

public java.util.Map<java.lang.String,java.lang.Double> getFields()

setStringField

public void setStringField(java.lang.String field,
                           java.lang.String value)

hasStringField

public boolean hasStringField(java.lang.String field)

getStringField

public java.lang.String getStringField(java.lang.String field)

getStringFields

public java.util.Map<java.lang.String,java.lang.String> getStringFields()

setStringFields

public void setStringFields(java.util.Map<java.lang.String,java.lang.String> stringFields)

getImage

public MarsOMEImage getImage()

setImage

public void setImage(MarsOMEImage image)

setDeltaT

public void setDeltaT(ome.units.quantity.Time dt)

getDeltaTinSeconds

public double getDeltaTinSeconds()

setImageID

public void setImageID(int imageID)

getImageID

public int getImageID()

setPlaneIndex

public void setPlaneIndex(int planeIndex)

getPlaneIndex

public int getPlaneIndex()

setC

public void setC(ome.xml.model.primitives.NonNegativeInteger c)

getC

public int getC()

setZ

public void setZ(ome.xml.model.primitives.NonNegativeInteger z)

getZ

public int getZ()

setT

public void setT(ome.xml.model.primitives.NonNegativeInteger t)

getT

public int getT()

setIFD

public void setIFD(ome.xml.model.primitives.NonNegativeInteger ifd)

getIFD

public int getIFD()

setFilename

public void setFilename(java.lang.String filename)

getFilename

public java.lang.String getFilename()

setUUID

public void setUUID(java.lang.String uuid)

getUUID

public java.lang.String getUUID()

setExposureTime

public void setExposureTime(ome.units.quantity.Time exposureTime)

getExposureTimeInSeconds

public double getExposureTimeInSeconds()

setPosX

public void setPosX(float posX)

getPosX

public double getPosX()

setPosY

public void setPosY(float posY)

getPosY

public double getPosY()

setPosZ

public void setPosZ(float posZ)

getPosZ

public double getPosZ()

getXDrift

public double getXDrift()

setXDrift

public void setXDrift(double xDrift)

getYDrift

public double getYDrift()

setYDrift

public void setYDrift(double yDrift)

getZDrift

public double getZDrift()

setZDrift

public void setZDrift(double zDrift)