de.mpg.biochem.mars.metadata

Class MarsOMEUtils

java.lang.Object

de.mpg.biochem.mars.metadata.MarsOMEUtils

public class MarsOMEUtils
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
MarsOMEUtils()

Method Summary

Modifier and Type	Method and Description
static java.util.Map<java.lang.Integer,java.util.Map<java.lang.Integer,java.lang.Double>>	buildChannelToTtoDtMap(MarsMetadata marsOMEMetadata)
static boolean	checkOMEMetadataForDt(MarsMetadata marsOMEMetadata)
static ome.xml.meta.OMEXMLMetadata	createOMEXMLMetadata(io.scif.ome.services.OMEXMLService omexmlService, net.imagej.Dataset dataset)
static java.lang.String	generateMetadataUIDfromDataset(ome.xml.meta.OMEXMLMetadata omexmlMetadata)
static void	getTimeFromNoprixSliceLabels(MarsMetadata marsMetadata, java.util.Map<java.lang.Integer,java.lang.String> metaDataStack)
static MarsOMEMetadata	translateDNAMetadataToMarsOMEMetadata(OLDMarsMetadata oldMetadata)
static MarsOMEMetadata	translateToMarsOMEMetadata(OLDMarsMetadata oldMetadata)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MarsOMEUtils

public MarsOMEUtils()

Method Detail

createOMEXMLMetadata

public static ome.xml.meta.OMEXMLMetadata createOMEXMLMetadata(io.scif.ome.services.OMEXMLService omexmlService,
                                                               net.imagej.Dataset dataset)
                                                        throws loci.common.services.ServiceException

Throws:

loci.common.services.ServiceException

generateMetadataUIDfromDataset

public static java.lang.String generateMetadataUIDfromDataset(ome.xml.meta.OMEXMLMetadata omexmlMetadata)

translateToMarsOMEMetadata

public static MarsOMEMetadata translateToMarsOMEMetadata(OLDMarsMetadata oldMetadata)

translateDNAMetadataToMarsOMEMetadata

public static MarsOMEMetadata translateDNAMetadataToMarsOMEMetadata(OLDMarsMetadata oldMetadata)

buildChannelToTtoDtMap

public static java.util.Map<java.lang.Integer,java.util.Map<java.lang.Integer,java.lang.Double>> buildChannelToTtoDtMap(MarsMetadata marsOMEMetadata)

checkOMEMetadataForDt

public static boolean checkOMEMetadataForDt(MarsMetadata marsOMEMetadata)

getTimeFromNoprixSliceLabels

public static void getTimeFromNoprixSliceLabels(MarsMetadata marsMetadata,
                                                java.util.Map<java.lang.Integer,java.lang.String> metaDataStack)