de.mpg.biochem.mars.molecule

Class MoleculeArchiveService

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

org.scijava.service.AbstractService

org.scijava.plugin.AbstractPTService<MoleculeArchiveService>

de.mpg.biochem.mars.molecule.MoleculeArchiveService

All Implemented Interfaces:

java.lang.Comparable<org.scijava.Prioritized>, net.imagej.ImageJService, org.scijava.Contextual, org.scijava.Disposable, org.scijava.Identifiable, org.scijava.Initializable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.PTService<MoleculeArchiveService>, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.Prioritized, org.scijava.service.Service, org.scijava.Versioned

public class MoleculeArchiveService
extends org.scijava.plugin.AbstractPTService<MoleculeArchiveService>
implements net.imagej.ImageJService

Constructor Summary

Constructors

Constructor and Description
MoleculeArchiveService()

Method Summary

Modifier and Type	Method and Description
void	addArchive(MoleculeArchive archive)
boolean	contains(MoleculeArchive archive)
boolean	contains(java.lang.String name)
MoleculeArchive<?,?,?,?>	createArchive(java.lang.String archiveType)
MoleculeArchive<?,?,?,?>	createArchive(java.lang.String archiveType, java.io.File file)
MoleculeArchive<?,?,?,?>	createArchive(java.lang.String archiveType, MoleculeArchiveSource source)
MoleculeArchive<?,?,?,?>	getArchive(java.lang.String name)
java.util.ArrayList<java.lang.String>	getArchiveNames()
java.util.List<MoleculeArchive<?,?,?,?>>	getArchives()
static java.lang.String	getArchiveTypeFromStore(java.io.File file)
java.lang.String	getArchiveTypeFromYama(java.io.File file)
java.lang.Class<MoleculeArchiveService>	getPluginType()
void	initialize()
void	removeArchive(MoleculeArchive archive)
void	removeArchive(java.lang.String title)
boolean	rename(java.lang.String oldName, java.lang.String newName)

Methods inherited from class org.scijava.plugin.AbstractPTService

pluginService

Methods inherited from class org.scijava.service.AbstractService

getContext, setContext, toString

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority

Methods inherited from class org.scijava.AbstractContextual

context

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.scijava.service.Service

registerEventHandlers

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier, log

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Methods inherited from interface org.scijava.Versioned

getVersion

Methods inherited from interface org.scijava.Disposable

dispose

Methods inherited from interface org.scijava.plugin.PTService

create, getPlugins, getPluginService

Constructor Detail

MoleculeArchiveService

public MoleculeArchiveService()

Method Detail

initialize

public void initialize()

Specified by:

initialize in interface org.scijava.Initializable

Specified by:

initialize in interface org.scijava.service.Service

getArchiveTypeFromYama

public java.lang.String getArchiveTypeFromYama(java.io.File file)
                                        throws java.io.IOException

Throws:

java.io.IOException

getArchiveTypeFromStore

public static java.lang.String getArchiveTypeFromStore(java.io.File file)
                                                throws java.io.IOException

Throws:

java.io.IOException

createArchive

public MoleculeArchive<?,?,?,?> createArchive(java.lang.String archiveType)

createArchive

public MoleculeArchive<?,?,?,?> createArchive(java.lang.String archiveType,
                                              java.io.File file)

createArchive

public MoleculeArchive<?,?,?,?> createArchive(java.lang.String archiveType,
                                              MoleculeArchiveSource source)

addArchive

public void addArchive(MoleculeArchive archive)

removeArchive

public void removeArchive(java.lang.String title)

removeArchive

public void removeArchive(MoleculeArchive archive)

rename

public boolean rename(java.lang.String oldName,
                      java.lang.String newName)

getArchiveNames

public java.util.ArrayList<java.lang.String> getArchiveNames()

contains

public boolean contains(java.lang.String name)

contains

public boolean contains(MoleculeArchive archive)

getArchive

public MoleculeArchive<?,?,?,?> getArchive(java.lang.String name)

getArchives

public java.util.List<MoleculeArchive<?,?,?,?>> getArchives()

getPluginType

public java.lang.Class<MoleculeArchiveService> getPluginType()

Specified by:

getPluginType in interface org.scijava.plugin.PTService<MoleculeArchiveService>