Interface | Description |
---|---|
JsonConvertibleRecord |
Interface for objects that are Json serialized and deserialized.
|
MarsRecord |
Basic interface for Mars records.
|
Molecule |
Molecule records act as the storage location for molecule properties.
|
MoleculeArchive<M extends Molecule,I extends MarsMetadata,P extends MoleculeArchiveProperties<M,I>,X extends MoleculeArchiveIndex<M,I>> |
MoleculeArchives are the primary storage structure of Mars datasets.
|
MoleculeArchiveIndex<M extends Molecule,I extends MarsMetadata> | |
MoleculeArchiveProperties<M extends Molecule,I extends MarsMetadata> |
Global properties of Molecule Archives are stored in
MoleculeArchiveProperties including comments, number of each record type, as
well as tag, parameter, Table column, region and position name indexes.
|
MoleculeArchiveWindow |
This interface must be implemented by Mars GUIs that provide MoleculeArchive
windows with access to archive information.
|
Class | Description |
---|---|
AbstractJsonConvertibleRecord |
Abstract superclass for JsonConvertibleRecords.
|
AbstractMarsRecord | |
AbstractMolecule |
Abstract superclass for molecule records.
|
AbstractMoleculeArchive<M extends Molecule,I extends MarsMetadata,P extends MoleculeArchiveProperties<M,I>,X extends MoleculeArchiveIndex<M,I>> |
Abstract superclass for the primary storage structure of Mars datasets.
|
AbstractMoleculeArchiveIndex<M extends Molecule,I extends MarsMetadata> | |
AbstractMoleculeArchiveProperties<M extends Molecule,I extends MarsMetadata> |
Abstract superclass for MoleculeArchiveProperties objects that contain global
properties of the MoleculeArchive, including indexing, comments, and many
other global properties.
|
ArchiveUtils | |
DefaultMolecule | |
DefaultMoleculeArchive |
Default implementation of
AbstractMoleculeArchive . |
DefaultMoleculeArchiveIndex | |
DefaultMoleculeArchiveProperties | |
DnaMolecule | |
DnaMoleculeArchive | |
DnaMoleculeArchiveIndex | |
DnaMoleculeArchiveProperties | |
MoleculeArchiveIOPlugin | |
MoleculeArchivePostprocessor | |
MoleculeArchivePreprocessor | |
MoleculeArchiveService | |
MoleculeArchiveWidget |
Swing implementation of multiple choice selector widget for MoleculeArchive
selection.
|
SingleMolecule |
SingleMolecule records act as the storage location for an array of molecule
properties.
|
SingleMoleculeArchive |
Implementation of
AbstractMoleculeArchive for default archives used
for routine single molecule time-series datasets composed of
SingleMolecule molecule records, MarsMetadata metadata
records, and SingleMoleculeArchiveProperties archive properties. |
SingleMoleculeArchiveIndex | |
SingleMoleculeArchiveProperties |