de.mpg.biochem.mars.molecule

Class ArchiveUtils

java.lang.Object

de.mpg.biochem.mars.molecule.ArchiveUtils

public class ArchiveUtils
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
ArchiveUtils()

Method Summary

Modifier and Type	Method and Description
static void	calculateDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive, java.lang.String backgroundTag, java.lang.String input_x, java.lang.String input_y, boolean use_incomplete_traces, java.lang.String mode, java.lang.String zeroPoint)
static void	calculateDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive, java.lang.String backgroundTag, java.lang.String input_x, java.lang.String input_y, boolean use_incomplete_traces, java.lang.String mode, java.lang.String zeroPoint, boolean singleChannel, int theC, org.scijava.log.LogService logService)
static void	calculateDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive, java.lang.String backgroundTag, java.lang.String input_x, java.lang.String input_y, boolean use_incomplete_traces, java.lang.String mode, java.lang.String zeroPoint, org.scijava.log.LogService logService)
static void	correctDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive, java.lang.String input_x, java.lang.String input_y, java.lang.String output_x, java.lang.String output_y)
static void	correctDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive, java.lang.String input_x, java.lang.String input_y, java.lang.String output_x, java.lang.String output_y, boolean singleChannel, int theC, org.scijava.log.LogService logService)
static void	correctDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive, java.lang.String input_x, java.lang.String input_y, java.lang.String output_x, java.lang.String output_y, org.scijava.log.LogService logService)
static boolean	isVirtualArchive(java.io.File file)
static boolean	isVirtualArchive(java.lang.String url)
static boolean	isVirtualArchive(java.net.URI uri)
static java.io.File	jsonFileExtensionFixer(java.io.File file)
static java.lang.String	jsonFileExtensionFixer(java.lang.String url)
static java.io.File	storeFileExtensionFixer(java.io.File file)
static java.lang.String	storeFileExtensionFixer(java.lang.String url)
static void	updateTableHeaders(MoleculeArchive<Molecule,MarsMetadata,?,?> archive)
static java.io.File	yamaFileExtensionFixer(java.io.File file)
static java.lang.String	yamaFileExtensionFixer(java.lang.String url)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ArchiveUtils

public ArchiveUtils()

Method Detail

isVirtualArchive

public static boolean isVirtualArchive(java.io.File file)

isVirtualArchive

public static boolean isVirtualArchive(java.net.URI uri)

isVirtualArchive

public static boolean isVirtualArchive(java.lang.String url)

yamaFileExtensionFixer

public static java.io.File yamaFileExtensionFixer(java.io.File file)

yamaFileExtensionFixer

public static java.lang.String yamaFileExtensionFixer(java.lang.String url)

jsonFileExtensionFixer

public static java.io.File jsonFileExtensionFixer(java.io.File file)

jsonFileExtensionFixer

public static java.lang.String jsonFileExtensionFixer(java.lang.String url)

storeFileExtensionFixer

public static java.io.File storeFileExtensionFixer(java.io.File file)

storeFileExtensionFixer

public static java.lang.String storeFileExtensionFixer(java.lang.String url)

calculateDrift

public static void calculateDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive,
                                  java.lang.String backgroundTag,
                                  java.lang.String input_x,
                                  java.lang.String input_y,
                                  boolean use_incomplete_traces,
                                  java.lang.String mode,
                                  java.lang.String zeroPoint)

calculateDrift

public static void calculateDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive,
                                  java.lang.String backgroundTag,
                                  java.lang.String input_x,
                                  java.lang.String input_y,
                                  boolean use_incomplete_traces,
                                  java.lang.String mode,
                                  java.lang.String zeroPoint,
                                  org.scijava.log.LogService logService)

calculateDrift

public static void calculateDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive,
                                  java.lang.String backgroundTag,
                                  java.lang.String input_x,
                                  java.lang.String input_y,
                                  boolean use_incomplete_traces,
                                  java.lang.String mode,
                                  java.lang.String zeroPoint,
                                  boolean singleChannel,
                                  int theC,
                                  org.scijava.log.LogService logService)

correctDrift

public static void correctDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive,
                                java.lang.String input_x,
                                java.lang.String input_y,
                                java.lang.String output_x,
                                java.lang.String output_y)

correctDrift

public static void correctDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive,
                                java.lang.String input_x,
                                java.lang.String input_y,
                                java.lang.String output_x,
                                java.lang.String output_y,
                                org.scijava.log.LogService logService)

updateTableHeaders

public static void updateTableHeaders(MoleculeArchive<Molecule,MarsMetadata,?,?> archive)

correctDrift

public static void correctDrift(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive,
                                java.lang.String input_x,
                                java.lang.String input_y,
                                java.lang.String output_x,
                                java.lang.String output_y,
                                boolean singleChannel,
                                int theC,
                                org.scijava.log.LogService logService)