de.mpg.biochem.mars.molecule.commands

Class RegionDifferenceCalculatorCommand

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand

All Implemented Interfaces:

java.lang.Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.Initializable, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class RegionDifferenceCalculatorCommand
extends org.scijava.command.DynamicCommand
implements org.scijava.command.Command, org.scijava.Initializable

Field Summary

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor and Description
RegionDifferenceCalculatorCommand()

Method Summary

Modifier and Type	Method and Description
static double	calcRegionDifference(Molecule molecule, java.lang.String xColumn, java.lang.String yColumn, MarsRegion regionOne, MarsRegion regionTwo, java.lang.String parameterName)
MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>>	getArchive()
java.lang.String	getParameterName()
java.lang.String	getRegionOne()
java.lang.String	getRegionSource()
java.lang.String	getRegionTwo()
java.lang.String	getXColumn()
java.lang.String	getYColumn()
void	initialize()
void	run()
void	setArchive(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive)
void	setParameterName(java.lang.String ParameterName)
void	setRegionOne(java.lang.String regionOneName)
void	setRegionSource(java.lang.String regionSource)
void	setRegionTwo(java.lang.String regionTwoName)
void	setXColumn(java.lang.String xColumn)
void	setYColumn(java.lang.String yColumn)

Methods inherited from class org.scijava.command.DynamicCommand

cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

cancel, getDelegateObject, getInputs, getOutputs, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Methods inherited from interface org.scijava.module.Module

cancel, getDelegateObject, getInputs, getOutputs, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Constructor Detail

RegionDifferenceCalculatorCommand

public RegionDifferenceCalculatorCommand()

Method Detail

initialize

public void initialize()

Specified by:

initialize in interface org.scijava.Initializable

Specified by:

initialize in interface org.scijava.module.Module

Overrides:

initialize in class org.scijava.module.AbstractModule

run

public void run()

Specified by:

run in interface java.lang.Runnable

Specified by:

run in interface org.scijava.module.MutableModule

calcRegionDifference

public static double calcRegionDifference(Molecule molecule,
                                          java.lang.String xColumn,
                                          java.lang.String yColumn,
                                          MarsRegion regionOne,
                                          MarsRegion regionTwo,
                                          java.lang.String parameterName)

setArchive

public void setArchive(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive)

getArchive

public MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> getArchive()

setXColumn

public void setXColumn(java.lang.String xColumn)

getXColumn

public java.lang.String getXColumn()

setYColumn

public void setYColumn(java.lang.String yColumn)

getYColumn

public java.lang.String getYColumn()

setRegionSource

public void setRegionSource(java.lang.String regionSource)

getRegionSource

public java.lang.String getRegionSource()

setRegionOne

public void setRegionOne(java.lang.String regionOneName)

getRegionOne

public java.lang.String getRegionOne()

setRegionTwo

public void setRegionTwo(java.lang.String regionTwoName)

getRegionTwo

public java.lang.String getRegionTwo()

setParameterName

public void setParameterName(java.lang.String ParameterName)

getParameterName

public java.lang.String getParameterName()