de.mpg.biochem.mars.kcp.commands

Class SigmaCalculatorCommand

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand

All Implemented Interfaces:

java.lang.Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.Initializable, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class SigmaCalculatorCommand
extends org.scijava.command.DynamicCommand
implements org.scijava.command.Command, org.scijava.Initializable

Field Summary

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor and Description
SigmaCalculatorCommand()

Method Summary

Modifier and Type	Method and Description
MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>>	getArchive()
double	getFrom()
java.lang.String	getRegionName()
java.lang.String	getRegionType()
double	getTo()
java.lang.String	getXColumn()
java.lang.String	getYColumn()
void	initialize()
void	run()
void	setArchive(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive)
void	setFrom(double from)
void	setRegionName(java.lang.String regionName)
void	setRegionType(java.lang.String regionType)
void	setTo(double to)
void	setXColumn(java.lang.String xColumn)
void	setYColumn(java.lang.String yColumn)

Methods inherited from class org.scijava.command.DynamicCommand

cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

cancel, getDelegateObject, getInputs, getOutputs, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Methods inherited from interface org.scijava.module.Module

cancel, getDelegateObject, getInputs, getOutputs, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Constructor Detail

SigmaCalculatorCommand

public SigmaCalculatorCommand()

Method Detail

initialize

public void initialize()

Specified by:

initialize in interface org.scijava.Initializable

Specified by:

initialize in interface org.scijava.module.Module

Overrides:

initialize in class org.scijava.module.AbstractModule

run

public void run()

Specified by:

run in interface java.lang.Runnable

Specified by:

run in interface org.scijava.module.MutableModule

setArchive

public void setArchive(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive)

getArchive

public MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> getArchive()

setXColumn

public void setXColumn(java.lang.String xColumn)

getXColumn

public java.lang.String getXColumn()

setYColumn

public void setYColumn(java.lang.String yColumn)

getYColumn

public java.lang.String getYColumn()

setRegionType

public void setRegionType(java.lang.String regionType)

getRegionType

public java.lang.String getRegionType()

setRegionName

public void setRegionName(java.lang.String regionName)

getRegionName

public java.lang.String getRegionName()

setFrom

public void setFrom(double from)

getFrom

public double getFrom()

setTo

public void setTo(double to)

getTo

public double getTo()