de.mpg.biochem.mars.kcp.commands

Class SingleChangePointFinder

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

All Implemented Interfaces:

java.lang.Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.Initializable, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class SingleChangePointFinder
extends org.scijava.command.DynamicCommand
implements org.scijava.command.Command, org.scijava.Initializable

Field Summary

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor and Description
SingleChangePointFinder()

Method Summary

Modifier and Type	Method and Description
boolean	getAddPosition()
boolean	getAddSegmentsTable()
boolean	getAnalyzeRegion()
MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>>	getArchive()
boolean	getFitSteps()
java.lang.String	getIncludeTags()
java.lang.String	getPosition()
java.lang.String	getRegion()
java.lang.String	getRegionSource()
java.lang.String	getTags()
int	getThreads()
java.lang.String	getXColumn()
java.lang.String	getYColumn()
void	initialize()
void	run()
void	setAddPosition(boolean addPosition)
void	setAddSegmentsTable(boolean addSegmentsTable)
void	setAnalyzeRegion(boolean analyseRegion)
void	setArchive(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive)
void	setFitSteps(boolean step_analysis)
void	setIncludeTags(java.lang.String include)
void	setPosition(java.lang.String positionName)
void	setRegion(java.lang.String regionName)
void	setRegionSource(java.lang.String regionSource)
void	setTags(java.lang.String tags)
void	setThreads(int nThreads)
void	setXColumn(java.lang.String xColumn)
void	setYColumn(java.lang.String yColumn)

Methods inherited from class org.scijava.command.DynamicCommand

cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

cancel, getDelegateObject, getInputs, getOutputs, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Methods inherited from interface org.scijava.module.Module

cancel, getDelegateObject, getInputs, getOutputs, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Constructor Detail

SingleChangePointFinder

public SingleChangePointFinder()

Method Detail

initialize

public void initialize()

Specified by:

initialize in interface org.scijava.Initializable

Specified by:

initialize in interface org.scijava.module.Module

Overrides:

initialize in class org.scijava.module.AbstractModule

run

public void run()

Specified by:

run in interface java.lang.Runnable

Specified by:

run in interface org.scijava.module.MutableModule

setArchive

public void setArchive(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive)

getArchive

public MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> getArchive()

setXColumn

public void setXColumn(java.lang.String xColumn)

getXColumn

public java.lang.String getXColumn()

setYColumn

public void setYColumn(java.lang.String yColumn)

getYColumn

public java.lang.String getYColumn()

setAnalyzeRegion

public void setAnalyzeRegion(boolean analyseRegion)

getAnalyzeRegion

public boolean getAnalyzeRegion()

setRegionSource

public void setRegionSource(java.lang.String regionSource)

getRegionSource

public java.lang.String getRegionSource()

setRegion

public void setRegion(java.lang.String regionName)

getRegion

public java.lang.String getRegion()

setAddSegmentsTable

public void setAddSegmentsTable(boolean addSegmentsTable)

getAddSegmentsTable

public boolean getAddSegmentsTable()

setAddPosition

public void setAddPosition(boolean addPosition)

getAddPosition

public boolean getAddPosition()

setPosition

public void setPosition(java.lang.String positionName)

getPosition

public java.lang.String getPosition()

setIncludeTags

public void setIncludeTags(java.lang.String include)

getIncludeTags

public java.lang.String getIncludeTags()

setTags

public void setTags(java.lang.String tags)

getTags

public java.lang.String getTags()

setFitSteps

public void setFitSteps(boolean step_analysis)

getFitSteps

public boolean getFitSteps()

setThreads

public void setThreads(int nThreads)

getThreads

public int getThreads()