de.mpg.biochem.mars.molecule.commands

Class BuildDnaArchiveCommand

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

All Implemented Interfaces:

java.lang.Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.Initializable, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class BuildDnaArchiveCommand
extends org.scijava.command.DynamicCommand
implements org.scijava.command.Command, org.scijava.Initializable

Field Summary

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor and Description
BuildDnaArchiveCommand()

Method Summary

Modifier and Type	Method and Description
SingleMoleculeArchive	getArchive1()
java.lang.String	getArchive1Name()
SingleMoleculeArchive	getArchive2()
java.lang.String	getArchive2Name()
SingleMoleculeArchive	getArchive3()
java.lang.String	getArchive3Name()
int	getDNALength()
double	getDNASearchRadius()
java.lang.String	getXColumn()
java.lang.String	getYColumn()
void	initialize()
void	run()
void	setArchive1(SingleMoleculeArchive archive1)
void	setArchive1Name(java.lang.String archive1Name)
void	setArchive2(SingleMoleculeArchive archive2)
void	setArchive2Name(java.lang.String archive2Name)
void	setArchive3(SingleMoleculeArchive archive3)
void	setArchive3Name(java.lang.String archive3Name)
void	setDNALength(int DNALength)
void	setDNASearchRadius(double radius)
void	setXColumn(java.lang.String xColumn)
void	setYColumn(java.lang.String yColumn)

Methods inherited from class org.scijava.command.DynamicCommand

cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

cancel, getDelegateObject, getInputs, getOutputs, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Methods inherited from interface org.scijava.module.Module

cancel, getDelegateObject, getInputs, getOutputs, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Constructor Detail

BuildDnaArchiveCommand

public BuildDnaArchiveCommand()

Method Detail

initialize

public void initialize()

Specified by:

initialize in interface org.scijava.Initializable

Specified by:

initialize in interface org.scijava.module.Module

Overrides:

initialize in class org.scijava.module.AbstractModule

run

public void run()

Specified by:

run in interface java.lang.Runnable

Specified by:

run in interface org.scijava.module.MutableModule

setDNASearchRadius

public void setDNASearchRadius(double radius)

getDNASearchRadius

public double getDNASearchRadius()

setDNALength

public void setDNALength(int DNALength)

getDNALength

public int getDNALength()

setXColumn

public void setXColumn(java.lang.String xColumn)

getXColumn

public java.lang.String getXColumn()

setYColumn

public void setYColumn(java.lang.String yColumn)

getYColumn

public java.lang.String getYColumn()

setArchive1

public void setArchive1(SingleMoleculeArchive archive1)

getArchive1

public SingleMoleculeArchive getArchive1()

setArchive1Name

public void setArchive1Name(java.lang.String archive1Name)

getArchive1Name

public java.lang.String getArchive1Name()

setArchive2

public void setArchive2(SingleMoleculeArchive archive2)

getArchive2

public SingleMoleculeArchive getArchive2()

setArchive2Name

public void setArchive2Name(java.lang.String archive2Name)

getArchive2Name

public java.lang.String getArchive2Name()

setArchive3

public void setArchive3(SingleMoleculeArchive archive3)

getArchive3

public SingleMoleculeArchive getArchive3()

setArchive3Name

public void setArchive3Name(java.lang.String archive3Name)

getArchive3Name

public java.lang.String getArchive3Name()