de.mpg.biochem.mars.molecule.commands

Class DriftCorrectorCommand

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

All Implemented Interfaces:

java.lang.Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class DriftCorrectorCommand
extends org.scijava.command.DynamicCommand
implements org.scijava.command.Command

Field Summary

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor and Description
DriftCorrectorCommand()

Method Summary

Modifier and Type	Method and Description
MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>>	getArchive()
java.lang.String	getBackgroundTag()
boolean	getCalculateDrift()
int	getChannel()
boolean	getCorrectDrift()
java.lang.String	getInputX()
java.lang.String	getInputY()
java.lang.String	getMode()
java.lang.String	getOutputX()
java.lang.String	getOutputY()
boolean	getSingleChannel()
boolean	getUseIncompleteTraces()
java.lang.String	getZeroPoint()
void	run()
void	setArchive(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive)
void	setBackgroundTag(java.lang.String backgroundTag)
void	setCalculateDrift(boolean calculateDrift)
void	setChannel(int theC)
void	setCorrectDrift(boolean correctDrift)
void	setInputX(java.lang.String input_x)
void	setInputY(java.lang.String input_y)
void	setMode(java.lang.String mode)
void	setOutputX(java.lang.String output_x)
void	setOutputY(java.lang.String output_y)
void	setSingleChannel(boolean singleChannel)
void	setUseIncompleteTraces(boolean use_incomplete_traces)
void	setZeroPoint(java.lang.String zeroPoint)

Methods inherited from class org.scijava.command.DynamicCommand

cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

cancel, getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Methods inherited from interface org.scijava.module.Module

cancel, getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Constructor Detail

DriftCorrectorCommand

public DriftCorrectorCommand()

Method Detail

run

public void run()

Specified by:

run in interface java.lang.Runnable

Specified by:

run in interface org.scijava.module.MutableModule

setArchive

public void setArchive(MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> archive)

getArchive

public MoleculeArchive<Molecule,MarsMetadata,MoleculeArchiveProperties<Molecule,MarsMetadata>,MoleculeArchiveIndex<Molecule,MarsMetadata>> getArchive()

setSingleChannel

public void setSingleChannel(boolean singleChannel)

getSingleChannel

public boolean getSingleChannel()

setChannel

public void setChannel(int theC)

getChannel

public int getChannel()

setCalculateDrift

public void setCalculateDrift(boolean calculateDrift)

getCalculateDrift

public boolean getCalculateDrift()

setInputX

public void setInputX(java.lang.String input_x)

getInputX

public java.lang.String getInputX()

setInputY

public void setInputY(java.lang.String input_y)

getInputY

public java.lang.String getInputY()

setMode

public void setMode(java.lang.String mode)

getMode

public java.lang.String getMode()

setZeroPoint

public void setZeroPoint(java.lang.String zeroPoint)

getZeroPoint

public java.lang.String getZeroPoint()

setUseIncompleteTraces

public void setUseIncompleteTraces(boolean use_incomplete_traces)

getUseIncompleteTraces

public boolean getUseIncompleteTraces()

getBackgroundTag

public java.lang.String getBackgroundTag()

setBackgroundTag

public void setBackgroundTag(java.lang.String backgroundTag)

setCorrectDrift

public void setCorrectDrift(boolean correctDrift)

getCorrectDrift

public boolean getCorrectDrift()

setOutputX

public void setOutputX(java.lang.String output_x)

getOutputX

public java.lang.String getOutputX()

setOutputY

public void setOutputY(java.lang.String output_y)

getOutputY

public java.lang.String getOutputY()