Toolbar

File

Save Save the created Molecule Archive in the format used currently (.yama for normally stored records, .sml for virtually stored records).
Save a Copy Save a copy of the current Molecule Archive.
Save a Json Copy Save a copy of the current Molecule Archive in .yama.json format.
Save a Virtual Store Copy Save the current Molecule Archive as virtually stored archive with .sml format (smile encoded).
Save a Json Virtual Store Copy Save a copy of the current Molecule Archive in virtual storage using .json files
Close Close Mars Rover.

A Molecule Archive can be saved in two ways:

  1. Normal storage: saved in the .yama file format. Additionally a .yama.rover file is saved containing information like settings and selections. A .rover file can be renamed and reused for another archive to apply the settings defined for another Archive. By default files are stored using Smile encoding.
  2. Virtual storage: saves a .yama.sml folder containing .sml files for the indexes, properties, all molecule UIDs and experiment IDs separately. Choose this saving mode when dealing with large data sets.

Tools

Delete Molecules Delete molecules with a specific tag or all molecules without tag.
Delete Molecule Tag Delete a specified or all tag(s).
Delete Molecule Parameters Delete a specified or all calculated parameter(s).
Delete Molecule Regions Delete a specified or all regions specified in the molecules tab.
Delete Molecule Positions Delete a specified or all positions in the molecule tab.
Delete Segment Tables Deletes segment tables generated by the kinetic change point analysis.
Merge Molecules Merges the data tables of multiple molecules. Use f.e. if a tracking result appears to be split into multiple smaller tracked segments.
Show Video Shows the video at a specific position corresponding to a tracked molecule. See also the tutorial on finding tracked molecules in the video and the BDV documentation.
Rebuild indexes Rebuild the index.json file when operating in virtual storage.