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ObjectArchive - Class in de.mpg.biochem.mars.object

ObjectArchive(String) - Constructor for class de.mpg.biochem.mars.object.ObjectArchive

ObjectArchive(File) - Constructor for class de.mpg.biochem.mars.object.ObjectArchive

ObjectArchive(String, MarsTable) - Constructor for class de.mpg.biochem.mars.object.ObjectArchive

ObjectArchive(String, File) - Constructor for class de.mpg.biochem.mars.object.ObjectArchive

ObjectArchive(URI) - Constructor for class de.mpg.biochem.mars.object.ObjectArchive

Constructor for loading a MoleculeArchive.

ObjectArchive(MoleculeArchiveSource) - Constructor for class de.mpg.biochem.mars.object.ObjectArchive

Constructor for loading a MoleculeArchive from a MoleculeArchiveSource.

ObjectArchiveIndex - Class in de.mpg.biochem.mars.object

ObjectArchiveIndex() - Constructor for class de.mpg.biochem.mars.object.ObjectArchiveIndex

ObjectArchiveIndex(JsonParser) - Constructor for class de.mpg.biochem.mars.object.ObjectArchiveIndex

ObjectArchiveProperties - Class in de.mpg.biochem.mars.object

ObjectArchiveProperties() - Constructor for class de.mpg.biochem.mars.object.ObjectArchiveProperties

ObjectArchiveProperties(JsonParser) - Constructor for class de.mpg.biochem.mars.object.ObjectArchiveProperties

objects() - Method in class de.mpg.biochem.mars.object.ObjectArchive

ObjectTrackerCommand - Class in de.mpg.biochem.mars.object.commands

ObjectTrackerCommand() - Constructor for class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

ok() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog

ok() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveOpenDialog

ok() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSaveDialog

okBtn - Variable in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog

okCallback - Variable in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog

OLDMarsMetadata - Class in de.mpg.biochem.mars.metadata

OLDMarsMetadata(JsonParser) - Constructor for class de.mpg.biochem.mars.metadata.OLDMarsMetadata

Constructor for loading a MarsMetadata record from a file.

open(String) - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveIOPlugin

open(Location) - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveIOPlugin

open(String) - Method in class de.mpg.biochem.mars.table.MarsTableIOPlugin

open(Location) - Method in class de.mpg.biochem.mars.table.MarsTableIOPlugin

openAWSS3SourceWithEndpoint(String, String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveIOFactory

Open an MoleculeArchiveSource for AWS S3.

openFSSource(File) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveIOFactory

Open an MoleculeArchiveSource for MoleculeArchive filesystem.

openSource(URI) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveIOFactory

Open an MoleculeArchiveSource for MoleculeArchive filesystem.

openSource(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveIOFactory

Open an MoleculeArchiveSource based on some educated guessing from the url.

openWebPage() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

Called when the openWebPage button is pressed.

openWebPage() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

openWebPage() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

openWebPage() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

openWebPage() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

outerOffsets(int, int) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils

This method creates a list of integer x, y offsets between the provided inner radius and outer radius.

OverlayChannelsCommand - Class in de.mpg.biochem.mars.image.commands

OverlayChannelsCommand() - Constructor for class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

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