A B C D E F G H I J K L M N O P R S T U V W X Y

G

Gaussian - Class in de.mpg.biochem.mars.kcp

Gaussian(double, double) - Constructor for class de.mpg.biochem.mars.kcp.Gaussian

Gaussian(double, double, double) - Constructor for class de.mpg.biochem.mars.kcp.Gaussian

Gaussian(double, double, double, double) - Constructor for class de.mpg.biochem.mars.kcp.Gaussian

Gaussian2D - Class in de.mpg.biochem.mars.util

Gaussian2D(double[]) - Constructor for class de.mpg.biochem.mars.util.Gaussian2D

Gaussian2D(double, double, double, double, double) - Constructor for class de.mpg.biochem.mars.util.Gaussian2D

gaussJordan(double[][], double[][]) - Method in class de.mpg.biochem.mars.util.LevenbergMarquardt

gaussJordan(double[][], double[][]) - Method in class de.mpg.biochem.mars.util.MarsFunctionFitter

generate_segments(double[], double[], ArrayList<Integer>, boolean) - Static method in class de.mpg.biochem.mars.kcp.KCP

generate_segments() - Method in class de.mpg.biochem.mars.kcp.KCP

generateMetadataUIDfromDataset(OMEXMLMetadata) - Static method in class de.mpg.biochem.mars.metadata.MarsOMEUtils

GenericModel - Interface in de.mpg.biochem.mars.metadata

get(int) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Retrieves the molecule record at the provided index.

get(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Get the molecule record with the given UID.

get(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Get the molecule record with the given UID.

get(int) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Retrieves the molecule record at the provided index.

get2DHyperSlice(ImgPlus<T>, int, int, int) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils

Convenience method to retrieve a 2D view from an ImgPlus for a given z, c, and t.

getAcquisitionDate() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getAddPosition() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getAddSegmentsTable() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getAddToMe() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getAddToRoiManager() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getAddToRoiManager() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getAffineTransform3D() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getAffineTransform3D(double, double) - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getAllowsChildren() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode

getAnalyzeRegion() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getApplyInverseTransformation() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getArchive() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getArchive() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getArchive() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getArchive() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getArchive() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand

getArchive() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getArchive() - Method in class de.mpg.biochem.mars.molecule.commands.AddTimeCommand

getArchive() - Method in class de.mpg.biochem.mars.molecule.commands.BuildArchiveFromTableCommand

getArchive() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getArchive() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand

getArchive() - Method in class de.mpg.biochem.mars.molecule.commands.VarianceCalculatorCommand

getArchive(String) - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveService

getArchive() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getArchive1() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getArchive1Name() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getArchive2() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getArchive2Name() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getArchive3() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getArchive3Name() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getArchiveNames() - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveService

getArchives() - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveService

getArchiveType() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getArchiveType() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getArchiveType() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getArchiveTypeFromStore(File) - Static method in class de.mpg.biochem.mars.molecule.MoleculeArchiveService

getArchiveTypeFromYama(File) - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveService

getArtifactId() - Method in class de.mpg.biochem.mars.util.LogBuilder

getAscending() - Method in class de.mpg.biochem.mars.table.commands.MarsTableSorterCommand

getBackgroundImage() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand

getBackgroundRegion() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getBackgroundTag() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getBackwardLink() - Method in class de.mpg.biochem.mars.image.Peak

getBackwardLinkID() - Method in class de.mpg.biochem.mars.image.Peak

getBaseline() - Method in class de.mpg.biochem.mars.image.Peak

getBdvSource(String) - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

Get the MarsBdvSource with the name provided.

getBdvSource(String) - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

Get the MarsBdvSource with the name provided.

getBdvSource(String) - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

getBdvSourceNames() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

Get the set of BigDataViewer source names.

getBdvSourceNames() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

Get the set of BigDataViewer source names.

getBdvSourceNames() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

Get the set of BigDataViewer source names.

getBdvSources() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

Get the Collection of BigDataViewer sources with each in MarsBdvSource format.

getBdvSources() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

Get the Collection of BigDataViewer sources with each in MarsBdvSource format.

getBdvSources() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

Get the Collection of BigDataViewer sources with each in MarsBdvSource format.

getBinning() - Method in class de.mpg.biochem.mars.metadata.MarsOMEChannel

getBooleanParameter(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the value of a boolean parameter.

getBooleanParameter(String) - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the value of a string parameter.

getBuild() - Method in class de.mpg.biochem.mars.util.LogBuilder

getC() - Method in class de.mpg.biochem.mars.image.Peak

getC() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getCalculateBackgroundSigma() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getCalculateDrift() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getChannel() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand

getChannel() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getChannel() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getChannel() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getChannel() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getChannel(int) - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getChannel() - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule

Get the channel for these molecules.

getChannel(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Channel for the molecule with the given UID.

getChannel() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getChannel() - Method in interface de.mpg.biochem.mars.molecule.Molecule

Get the channel for this molecule record.

getChannel(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Channel for the molecule with the given UID.

getChannel() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getChannel() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getChannelIndex() - Method in class de.mpg.biochem.mars.metadata.MarsOMEChannel

getChannels() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getChannelSet() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the set of channel indexes for molecules in the archive.

getChannelSet() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the set of channel indexes for molecules in the archive.

getChildAt(int) - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode

getChildCount() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode

getCollectionDate() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

getCollectionDate() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

Get the Date when these data were collected.

getCollectionDate() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

Get the Date when these data were collected.

getColocalize() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getColor() - Method in class de.mpg.biochem.mars.util.MarsPosition

Get the string color of the region in hex.

getColor() - Method in class de.mpg.biochem.mars.util.MarsRegion

Get the string color of the region in hex.

getColorName() - Method in class de.mpg.biochem.mars.image.Peak

getColumn() - Method in class de.mpg.biochem.mars.molecule.commands.VarianceCalculatorCommand

getColumn() - Method in class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand

getColumn() - Method in class de.mpg.biochem.mars.table.commands.MarsTableSorterCommand

getColumn() - Method in class de.mpg.biochem.mars.util.MarsPosition

Get the name of the column the position value refers to.

getColumn() - Method in class de.mpg.biochem.mars.util.MarsRegion

Get the name of the column the start and end values refer to.

getColumnAsDoubles(String) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns an array of double values for the column given.

getColumnAsDoublesNoNaNs(String) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns an array of double values for the column given.

getColumnAsDoublesNoNaNs(String, String, double, double) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns an array of double values for the column within the range given for a rowSelectionColumn (inclusive of bounds).

getColumnHeadingList() - Method in class de.mpg.biochem.mars.table.MarsTable

Returns the column headings as an ArrayList of strings.

getColumnHeadings() - Method in class de.mpg.biochem.mars.table.MarsTable

Returns the column headings as an array of strings.

getColumnSet() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the unique set of column names in use in molecule DataTables.

getColumnSet() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the unique set of column names in use in molecule Tables.

getComments() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Global comments.

getComments() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get archive comments.

getComments() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Global comments.

getComments() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get archive comments.

getComponent() - Method in class de.mpg.biochem.mars.swingUI.MarsSwingInputPanel

getComponentType() - Method in class de.mpg.biochem.mars.swingUI.MarsSwingInputPanel

getConfidenceLevel() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getContent() - Method in class de.mpg.biochem.mars.util.MarsDocument

getCorrectDrift() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getCorrectDrift() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getDataset() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand

getDataset() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getDataset() - Method in class de.mpg.biochem.mars.image.commands.GradientCommand

getDataset() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getDataset() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getDataset() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getDataset() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getDataset() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getDataset() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getDataTable() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

getDataType() - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveIOPlugin

getDataType() - Method in class de.mpg.biochem.mars.table.MarsTableIOPlugin

getDeltaTinSeconds() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getDescendant(String) - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

getDescendants(Predicate<MoleculeArchiveTreeNode>) - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

getDescription() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getDetectorManufacturer() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getDetectorModel() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getDetectorSerialNumber() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getDetectorSettingID() - Method in class de.mpg.biochem.mars.metadata.MarsOMEChannel

getDetectorType() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getDimensionOrder() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getDirection() - Method in class de.mpg.biochem.mars.image.commands.GradientCommand

getDirectory() - Method in class de.mpg.biochem.mars.molecule.commands.MergeCommand

getDirectory() - Method in class de.mpg.biochem.mars.molecule.commands.MergeVirtualStoresCommand

getDNACountTable() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getDNALength() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getDNASearchRadius() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getDNATable() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getDocument(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

getDocument(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Retrieve document.

getDocumentNames() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

getDocumentNames() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the names of all documents.

getDoublePosition(int) - Method in class de.mpg.biochem.mars.image.DNASegment

getDoublePosition(int) - Method in class de.mpg.biochem.mars.image.Peak

getDoublePosition(int) - Method in class de.mpg.biochem.mars.image.PeakPixel

getDuration() - Method in class de.mpg.biochem.mars.kcp.Gaussian

getElectronicOffset() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand

getEnd() - Method in class de.mpg.biochem.mars.table.GroupIndices

getEnd() - Method in class de.mpg.biochem.mars.util.MarsRegion

Get the upper bound of the region.

getEquipartitionForce(double) - Method in class de.mpg.biochem.mars.util.ForceCalculator

getEquipartitionForce(double, double) - Method in class de.mpg.biochem.mars.util.MotionBlurForceCalculator

getExcludedTimePointsList() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getExcludedTimePointsList() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getExposureTimeInSeconds() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getField(String) - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getFields() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getFile() - Method in class de.mpg.biochem.mars.table.MarsTable

getFileExtension() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getFilename() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getFilterByMedianIntensity() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getFilterByMedianIntensity() - Method in class de.mpg.biochem.mars.image.DNAFinder

getFilterByVariance() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getFilterByVariance() - Method in class de.mpg.biochem.mars.image.DNAFinder

getFilterColocalizingRois() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getFilterOriginalRois() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getFindNegativePeaks() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getFindNegativePeaks() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getFit() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getFit() - Method in class de.mpg.biochem.mars.image.DNAFinder

getFitPeaks() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getFitRadius() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getFitRadius() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getFitRadius() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getFitRadius() - Method in class de.mpg.biochem.mars.image.DNAFinder

getFitSecondOrder() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getFitSecondOrder() - Method in class de.mpg.biochem.mars.image.DNAFinder

getFitSteps() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getFitSteps() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getFloatPosition(int) - Method in class de.mpg.biochem.mars.image.DNASegment

getFloatPosition(int) - Method in class de.mpg.biochem.mars.image.Peak

getFloatPosition(int) - Method in class de.mpg.biochem.mars.image.PeakPixel

getFNV1aBase58(String) - Static method in class de.mpg.biochem.mars.util.MarsMath

getForwardLink() - Method in class de.mpg.biochem.mars.image.Peak

getForwardLinkID() - Method in class de.mpg.biochem.mars.image.Peak

getFrom() - Method in class de.mpg.biochem.mars.image.PeakLink

getFrom() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand

getFromID() - Method in class de.mpg.biochem.mars.image.PeakLink

getGain() - Method in class de.mpg.biochem.mars.metadata.MarsOMEChannel

getGaussianSigma() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getGaussianSigma() - Method in class de.mpg.biochem.mars.image.commands.GradientCommand

getGaussianSigma() - Method in class de.mpg.biochem.mars.image.DNAFinder

getGenerateDNACountTable() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getGenerateDNATable() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getGeneratePeakCountTable() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getGeneratePeakTable() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getGlobalSigma() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getGridProcess() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getGroupColumn() - Method in class de.mpg.biochem.mars.table.commands.MarsTableSorterCommand

getGroupSeparator() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage

Returns the symbol that is used to separate nodes in a group path.

getHeight() - Method in class de.mpg.biochem.mars.image.Peak

getHorizontalGridRegions() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getID() - Method in class de.mpg.biochem.mars.image.Peak

getID() - Method in class de.mpg.biochem.mars.metadata.MarsOMEChannel

getID() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getIFD() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getImage() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand

getImage(int) - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

getImage(int) - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

getImage() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getImage(int) - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

getImage() - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule

Get the image index for this molecule.

getImage(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Image index for the molecule with the given UID.

getImage() - Method in interface de.mpg.biochem.mars.molecule.Molecule

Get the image index for this molecule record.

getImage(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Image index for the molecule with the given UID.

getImageCount() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

getImageCount() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

getImageCount() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

getImageID() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getImageID() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getImagePlus() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getImagePlus() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getIncludeTags() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getIncludeTags() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getIndex(TreeNode) - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode

getIndexesInputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getIndexesInputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getIndexesInputStream() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getIndexesOutputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getIndexesOutputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getIndexesOutputStream() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getInformationsRow() - Method in interface de.mpg.biochem.mars.metadata.GenericModel

getInformationsRow() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getInformationsRow() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getInnerRadius() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getInnerRadius() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getInputSchema() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the Json input schema for the archive.

getInputSchema() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the Json input schema for the archive.

getInputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getInputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getInputStream() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getInputX() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getInputY() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getIntegrate() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getIntegrate() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getIntegrationInnerRadius() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getIntegrationInnerRadius() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getIntegrationMap(String, int) - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getIntegrationMap(String, int) - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getIntegrationOuterRadius() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getIntegrationOuterRadius() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getIntensity() - Method in class de.mpg.biochem.mars.image.Peak

getInterpolationFactor() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getInterval(String) - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getIntervals() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getJFactory() - Static method in class de.mpg.biochem.mars.util.MarsUtil

getJsonGenerator(String) - Method in class de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord

Get the JsonGenerator for a field.

getJsonGenerator(String) - Method in interface de.mpg.biochem.mars.molecule.JsonConvertibleRecord

Get the JsonGenerator for a field.

getJsonGenerator(String) - Method in class de.mpg.biochem.mars.table.MarsTable

getJsonParser(String) - Method in class de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord

Get the JsonParser for a field.

getJsonParser(String) - Method in interface de.mpg.biochem.mars.molecule.JsonConvertibleRecord

Get the JsonParser for a field.

getJsonParser(String) - Method in class de.mpg.biochem.mars.table.MarsTable

getJTree() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog

getKeepOriginals() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getLength() - Method in class de.mpg.biochem.mars.image.DNASegment

getLocalOtsuRadius() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getLog() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

Get the log that contains the history of processing steps conducted on this dataset and the associated molecule records contained in the same MoleculeArchive.

getLog() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

Get the log that contains the history of processing steps conducted on this dataset and the associated molecule records contained in the same MoleculeArchive.

getLog() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

Get the log that contains the history of processing steps conducted on this dataset and the associated molecule records contained in the same.

getM00() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getM01() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getM02() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getM10() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getM11() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getM12() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getMax() - Method in class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand

getMaxDifferenceT() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getMaxDifferenceT() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getMaxDifferenceX() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getMaxDifferenceX() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getMaxDifferenceY() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getMaxDifferenceY() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getMeanBackground() - Method in class de.mpg.biochem.mars.image.Peak

getMedia(String) - Method in class de.mpg.biochem.mars.util.MarsDocument

getMediaIDs() - Method in class de.mpg.biochem.mars.util.MarsDocument

getMedianBackground() - Method in class de.mpg.biochem.mars.image.Peak

getMedianIntensity() - Method in class de.mpg.biochem.mars.image.DNASegment

getMedianIntensityLowerBound() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getMedianIntensityLowerBound() - Method in class de.mpg.biochem.mars.image.DNAFinder

getMetadata(int) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Retrieves an MarsMetadata record.

getMetadata(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Retrieves a MarsMetadata record.

getMetadata(int) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Retrieves an MarsMetadata record.

getMetadata(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Retrieves a metadata record.

getMetadataInputStream(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getMetadataInputStream(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getMetadataInputStream(String) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getMetadataOutputStream(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getMetadataOutputStream(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getMetadataOutputStream(String) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getMetadataTagList(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Comma separated list of tags for the MarsMetadata record with the given UID.

getMetadataTagList(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Comma separated list of tags for the metadata record with the given UID.

getMetadataTagSet(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Tags for the MarsMetadata record with the given UID.

getMetadataTagSet(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Tags for the metadata record with the given UID.

getMetadataUID() - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule

Get the UID of the MarsMetadata record associated with this molecule.

getMetadataUID() - Method in interface de.mpg.biochem.mars.molecule.Molecule

Get the UID of the MarsMetadata record associated with this molecule.

getMetadataUIDforMolecule(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Get the UID of the metadata for a molecule record.

getMetadataUIDforMolecule(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex

getMetadataUIDforMolecule(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Get the UID of the metadata for a molecule record.

getMetadataUIDforMolecule(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveIndex

getMetadataUIDs() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getMetadataUIDs() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getMetadataUIDs() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getMetadataUIDs() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Retrieves the list of UIDs of all MarsMetadata records.

getMetadataUIDs() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Retrieves the list of UIDs of all metadata records.

getMetadataUIDSet() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex

getMetadataUIDSet() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveIndex

getMetadataUIDSource() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getMetadataUIDSource() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getMetadataUIDSource() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getMetadataUIDSource() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getMetadataUIDtoTagListMap() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex

getMetadataUIDtoTagListMap() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveIndex

getMicroscope() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getMicroscope() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getMicroscope() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getMicroscope() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getMicroscopeName() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

Get the name of the microscope used for data collection.

getMicroscopeName() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

Get the name of the microscope used for data collection.

getMicroscopeName() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

Get the name of the microscope used for data collection.

getMin() - Method in class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand

getMinimumArea() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getMinimumDistance() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getMinimumDistance() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getMinimumDistance() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getMinimumDistance() - Method in class de.mpg.biochem.mars.image.DNAFinder

getMinimumDistance() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getMinimumRsquared() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getMinimumRsquared() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getMinimumTrackLength() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getMinimumTrackLength() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getMode() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getMoleculeBatch(List<String>, String, String, int, int, List<String>, int) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Utility function to generate batches of molecules data in an optimal format for machine learning using keras.

getMoleculeBatch(List<String>, String, String, int, int, List<String>, int) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Utility function to generate batches of molecules data in an optimal format for machine learning using keras.

getMoleculeIdColumn() - Method in class de.mpg.biochem.mars.molecule.commands.BuildArchiveFromTableCommand

getMoleculeInputStream(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getMoleculeInputStream(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getMoleculeInputStream(String) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getMoleculeOutputStream(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getMoleculeOutputStream(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getMoleculeOutputStream(String) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getMoleculeUIDs() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getMoleculeUIDs() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getMoleculeUIDs() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getMoleculeUIDs() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Retrieves the list of UIDs for all Molecule records.

getMoleculeUIDs() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Retrieves the list of UIDs for all Molecule records.

getMoleculeUIDSet() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex

getMoleculeUIDSet() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveIndex

getMoleculeUIDtoChannelMap() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex

getMoleculeUIDtoChannelMap() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveIndex

getMoleculeUIDtoImageMap() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex

getMoleculeUIDtoImageMap() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveIndex

getMoleculeUIDtoMetadataUIDMap() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex

getMoleculeUIDtoMetadataUIDMap() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveIndex

getMoleculeUIDtoTagListMap() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex

getMoleculeUIDtoTagListMap() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveIndex

getN5Dataset() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getName() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getName() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getName() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getName() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getName() - Method in class de.mpg.biochem.mars.metadata.MarsOMEChannel

getName() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getName() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Get the name of the archive.

getName() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Get the name of the archive.

getName() - Method in class de.mpg.biochem.mars.table.MarsTable

Retrieves the name of the table.

getName() - Method in class de.mpg.biochem.mars.util.MarsDocument

Get position name.

getName() - Method in class de.mpg.biochem.mars.util.MarsPosition

Get position name.

getName() - Method in class de.mpg.biochem.mars.util.MarsRegion

Get the name of the region.

getNodeName() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

getNotes() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get notes for this record.

getNotes() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get notes for this record.

getNSTD() - Method in class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand

getNumberOfIntegrationMaps() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getNumberOfIntegrationMaps() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getNumberOfMetadatas() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Number of MarsMetadata records in the MoleculeArchive.

getNumberOfMetadatas() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the number of MarsMetadata records in the archive.

getNumberOfMetadatas() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Number of metadata records in the MoleculeArchive.

getNumberOfMetadatas() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the number of MarsMetadata records in the archive.

getNumberOfMolecules() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Number of molecule records in the MoleculeArchive.

getNumberOfMolecules() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the number of molecule in the archive.

getNumberOfMolecules() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Number of molecule records in the MoleculeArchive.

getNumberOfMolecules() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the number of molecule in the archive.

getObject(String) - Method in class de.mpg.biochem.mars.table.MarsTableRow

getObject(int) - Method in class de.mpg.biochem.mars.table.MarsTableRow

getOpacity() - Method in class de.mpg.biochem.mars.util.MarsRegion

Get the opacity of the region.

getOptimalDNALength() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getOptimalDNALength() - Method in class de.mpg.biochem.mars.image.DNAFinder

getOuterRadius() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getOuterRadius() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getOutput2DSlice(Img<DoubleType>, int[]) - Static method in class de.mpg.biochem.mars.image.commands.GradientCommand

getOutputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getOutputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getOutputStream() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getOutputX() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getOutputY() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getParameter(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the value of a parameter.

getParameter(String) - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the value of a parameter.

getParameterName() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand

getParameterName() - Method in class de.mpg.biochem.mars.molecule.commands.VarianceCalculatorCommand

getParameters() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the map for all parameters.

getParameters() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the map for all parameters.

getParameterSet() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the set of molecule parameter names in use.

getParameterSet() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the set of molecule parameter names in use.

getParent() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode

getParentPath() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

getPath() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getPath() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getPath() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getPath() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getPath() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog

getPath() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

getPeakCountTable() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getPeakTable() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getPixelID() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPixelLength() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getPixelLength() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getPixelsPhysicalSizeX() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPixelsPhysicalSizeY() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPixelsPhysicalSizeZ() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPixelUnits() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getPixelUnits() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getPlane(int, int, int, int) - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

Get the MarsOMEPlane for a given image and ZCT position.

getPlane(int, int) - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

getPlane(int, int) - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

getPlane(int, int, int, int) - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

getPlane(int) - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPlane(int, int, int) - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPlane(int, int) - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

getPlane(int, int, int, int) - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

getPlaneCount() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPlaneIndex(int, int, int) - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPlaneIndex() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getPlanes() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getPluginType() - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveService

getPluginType() - Method in class de.mpg.biochem.mars.table.MarsTableService

getPosition() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getPosition(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get a MarsPosition.

getPosition(String) - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get a MarsPosition.

getPosition() - Method in class de.mpg.biochem.mars.util.MarsPosition

Get the position value.

getPositionNames() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the set of position names contained in this record.

getPositionNames() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the set of position names contained in this record.

getPositionOnDNA(double, double, double) - Method in class de.mpg.biochem.mars.image.DNASegment

getPositions() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the map for all positions.

getPositions() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the map for all regions.

getPositionSet() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the set of molecule position names in use.

getPositionSet() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the set of molecule position names in use.

getPosX() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getPosY() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getPosZ() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getProcessAllFrames() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getProcessAllFrames() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getProperties() - Method in class de.mpg.biochem.mars.image.Peak

getProperties() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getPropertiesInputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getPropertiesInputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getPropertiesInputStream() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getPropertiesOutputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getPropertiesOutputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getPropertiesOutputStream() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getRegion() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand

getRegion() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getRegion() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getRegion() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getRegion() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getRegion(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get a MarsRegion.

getRegion(String) - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get a MarsRegion.

getRegion() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getRegionName() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand

getRegionNames() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the set of region names contained in this record.

getRegionNames() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the set of region names contained in this record.

getRegionOne() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand

getRegions() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the map for all regions.

getRegions() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the map for all regions.

getRegionSet() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the set of molecule region names in use.

getRegionSet() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the set of molecule region names in use.

getRegionSource() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getRegionSource() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getRegionSource() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand

getRegionTwo() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand

getRegionType() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand

getResultsTableTitles() - Static method in class de.mpg.biochem.mars.table.commands.IJ1ResultsTableConversionCommand

getRoiManager() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getRoiManager() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getRoiManager() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getROIs() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getROIs() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getROIs() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getROIs() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getRoiType() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getRoverInputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getRoverInputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getRoverInputStream() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getRoverOutputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getRoverOutputStream() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getRoverOutputStream() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource

getRowAsList(int) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns the row specified as a List of Objects.

getRowAsString(int) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns a comma delimited string of the values in the row specified.

getRowNumber() - Method in class de.mpg.biochem.mars.table.MarsTableRow

getRSquared() - Method in class de.mpg.biochem.mars.image.Peak

getSegmentsTable(String, String) - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule

Retrieve a segments table (MarsTable) generated using xColumn and yColumn.

getSegmentsTable(String, String, String) - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule

Retrieve a Segments table (MarsTable) generated using xColum, yColumn and region names.

getSegmentsTable(List<String>) - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule

Retrieve a segments table (MarsTable) generated using x column, y column and region names provided in index positions 0, 1 and 2 of a List, respectively.

getSegmentsTable(String, String) - Method in interface de.mpg.biochem.mars.molecule.Molecule

Retrieve a segments table (MarsTable) generated using xColumn and yColumn.

getSegmentsTable(String, String, String) - Method in interface de.mpg.biochem.mars.molecule.Molecule

Retrieve a Segments table (MarsTable) generated using xColum, yColumn and region names.

getSegmentsTable(List<String>) - Method in interface de.mpg.biochem.mars.molecule.Molecule

Retrieve a segments table (MarsTable) generated using x column, y column and region names provided in index positions 0, 1 and 2 of a List, respectively.

getSegmentsTableNames() - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule

Get the set of segment table names as lists of x and y column names.

getSegmentsTableNames() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the unique set of segment table names found in molecule records.

getSegmentsTableNames() - Method in interface de.mpg.biochem.mars.molecule.Molecule

/** Get the set of segment table names as lists of x and y column names.

getSegmentsTableNames() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the unique set of segment table names found in molecule records.

getShape() - Method in class de.mpg.biochem.mars.image.Peak

getShape(int) - Method in class de.mpg.biochem.mars.object.MartianObject

getShapeKeys() - Method in class de.mpg.biochem.mars.object.MartianObject

getSigma() - Method in class de.mpg.biochem.mars.image.Peak

getSingleChannel() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getSingleTimePoint() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getSingleTimePointMode() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource

getSizeC() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getSizeT() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getSizeX() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getSizeY() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getSizeZ() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getSource() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

getSource() - Method in class de.mpg.biochem.mars.molecule.commands.AddTimeCommand

getSource() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

MoleculeArchiveSource backing the MoleculeArchive.

getSourceDirectory() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata

Get the Source Directory where the images are stored.

getSourceDirectory() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata

Get the Source Directory where the images are stored.

getSourceDirectory() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata

Get the Source Directory where the images are stored.

getSquaredDistance() - Method in class de.mpg.biochem.mars.image.PeakLink

getStart() - Method in class de.mpg.biochem.mars.table.GroupIndices

getStart() - Method in class de.mpg.biochem.mars.util.MarsRegion

Get lower bound of the region.

getStringField(String) - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getStringFields() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getStringParameter(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the value of a string parameter.

getStringParameter(String) - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the value of a string parameter.

getStringValue(String, int) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns the string value for the column header and row index specified.

getStringValue(int, int) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns the string value at the column and row indices specified.

getStringValue(int) - Method in class de.mpg.biochem.mars.table.MarsTableRow

getStringValue(String) - Method in class de.mpg.biochem.mars.table.MarsTableRow

getStroke() - Method in class de.mpg.biochem.mars.util.MarsPosition

Get the stroke value (line thickness).

getT() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getT() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getT() - Method in class de.mpg.biochem.mars.image.Peak

getT() - Method in class de.mpg.biochem.mars.image.PeakLink

getT() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getT() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getTable() - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule

Get the MarsTable holding the primary data for this record.

getTable() - Method in class de.mpg.biochem.mars.molecule.commands.BuildArchiveFromTableCommand

getTable() - Method in interface de.mpg.biochem.mars.molecule.Molecule

Get the MarsTable holding the primary data for this molecule record.

getTable() - Method in class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand

getTable() - Method in class de.mpg.biochem.mars.table.commands.MarsTableSorterCommand

getTable(String) - Method in class de.mpg.biochem.mars.table.MarsTableService

getTableNames() - Method in class de.mpg.biochem.mars.table.MarsTableService

getTables() - Method in class de.mpg.biochem.mars.table.MarsTableService

getTagList(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Comma separated list of tags for the molecule with the given UID.

getTagList(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Comma separated list of tags for the molecule with the given UID.

getTags() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getTags() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getTags() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the set of all tags.

getTags() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the set of all tags.

getTagsArray() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get an array list of all tags.

getTagsArray() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get an array list of all tags.

getTagSet(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Tags for the molecule with the given UID.

getTagSet() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties

Get the set of molecule tag names in use.

getTagSet(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Tags for the molecule with the given UID.

getTagSet() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties

Get the set of molecule tag names in use.

getTDifference() - Method in class de.mpg.biochem.mars.image.PeakLink

getTemperature() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getThreads() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand

getThreads() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getThreads() - Method in class de.mpg.biochem.mars.image.commands.GradientCommand

getThreads() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getThreads() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getThreads() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getThreads() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getThreads() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getThreads() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getThreads() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getThreads() - Method in class de.mpg.biochem.mars.molecule.commands.MergeVirtualStoresCommand

getThreads() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getThreshold() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getThreshold() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getThreshold() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getThreshold() - Method in class de.mpg.biochem.mars.image.DNAFinder

getThreshold() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getTimeFromNoprixSliceLabels(MarsMetadata, Map<Integer, String>) - Static method in class de.mpg.biochem.mars.metadata.MarsOMEUtils

getTimeIncrement() - Method in class de.mpg.biochem.mars.molecule.commands.AddTimeCommand

getTimeIncrementInSeconds() - Method in class de.mpg.biochem.mars.metadata.MarsOMEImage

getTo() - Method in class de.mpg.biochem.mars.image.PeakLink

getTo() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand

getToID() - Method in class de.mpg.biochem.mars.image.PeakLink

getTrackUID() - Method in class de.mpg.biochem.mars.image.Peak

getTransformFromRegion() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getTransformMe() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand

getTransformToRegion() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeCellRenderer

getType() - Method in class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand

getUI() - Method in class de.mpg.biochem.mars.swingUI.MarsLegacyInputHarvester

getUID() - Method in class de.mpg.biochem.mars.kcp.KCPSegment

getUID() - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord

Get the UID for this record.

getUID() - Method in interface de.mpg.biochem.mars.molecule.MarsRecord

Get the UID for this record.

getUIService() - Method in class de.mpg.biochem.mars.table.MarsTableService

getURI() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

getURI() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource

getURI() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage

getUseAreaFilter() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getUseIncompleteTraces() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

getUseLocalOstu() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getUUID() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getUUID(String) - Static method in class de.mpg.biochem.mars.util.MarsMath

getUUID58() - Static method in class de.mpg.biochem.mars.util.MarsMath

getUUID58(String) - Static method in class de.mpg.biochem.mars.util.MarsMath

getValue(double, double) - Method in class de.mpg.biochem.mars.kcp.Gaussian

getValue(double) - Method in class de.mpg.biochem.mars.kcp.Gaussian

getValue() - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveWidget

getValue(int, int) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns the double value at the column and row indices specified.

getValue(String, int) - Method in class de.mpg.biochem.mars.table.MarsTable

Returns the double value at the column header and row index specified.

getValue(int) - Method in class de.mpg.biochem.mars.table.MarsTableRow

getValue(String) - Method in class de.mpg.biochem.mars.table.MarsTableRow

getValue() - Method in class de.mpg.biochem.mars.table.MarsTableWidget

getValue(int, int) - Method in class de.mpg.biochem.mars.util.Gaussian2D

getValue(double[], double[], double[]) - Method in class de.mpg.biochem.mars.util.LevenbergMarquardt

getValue(double[], double[]) - Method in interface de.mpg.biochem.mars.util.MarsFunction

getVariance() - Method in class de.mpg.biochem.mars.image.DNASegment

getVarianceUpperBound() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getVarianceUpperBound() - Method in class de.mpg.biochem.mars.image.DNAFinder

getVerbose() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand

getVerbose() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand

getVerbose() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand

getVerboseOutput() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getVerboseOutput() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand

getVersion() - Method in class de.mpg.biochem.mars.util.LogBuilder

getVerticalGridRegions() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand

getVoltage() - Method in class de.mpg.biochem.mars.metadata.MarsOMEChannel

getWidgetComponentType() - Method in class de.mpg.biochem.mars.swingUI.MarsSwingInputPanel

getWindow() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive

Returns the MoleculeArchiveWindow holding this archive, if one exists.

getWindow() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive

Returns the MoleculeArchiveWindow holding this archive, if one exists.

getWindow() - Method in class de.mpg.biochem.mars.table.MarsTable

Returns a reference to the window containing the table if there is one.

getWLCForce(double) - Method in class de.mpg.biochem.mars.util.ForceCalculator

getWLCForce(double) - Method in class de.mpg.biochem.mars.util.MotionBlurForceCalculator

getX() - Method in class de.mpg.biochem.mars.image.Peak

getX1() - Method in class de.mpg.biochem.mars.image.DNASegment

getX2() - Method in class de.mpg.biochem.mars.image.DNASegment

getXCenter() - Method in class de.mpg.biochem.mars.image.DNASegment

getXColumn() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getXColumn() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand

getXColumn() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getXColumn() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getXColumn() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand

getXDNAEndSearchRadius() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getXDNAEndSearchRadius() - Method in class de.mpg.biochem.mars.image.DNAFinder

getXDrift() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getY() - Method in class de.mpg.biochem.mars.image.Peak

getY1() - Method in class de.mpg.biochem.mars.image.DNASegment

getY2() - Method in class de.mpg.biochem.mars.image.DNASegment

getYCenter() - Method in class de.mpg.biochem.mars.image.DNASegment

getYColumn() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand

getYColumn() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand

getYColumn() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder

getYColumn() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand

getYColumn() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand

getYDNAEndSearchRadius() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand

getYDNAEndSearchRadius() - Method in class de.mpg.biochem.mars.image.DNAFinder

getYDrift() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getZ() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getZDrift() - Method in class de.mpg.biochem.mars.metadata.MarsOMEPlane

getZeroPoint() - Method in class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand

GradientCommand - Class in de.mpg.biochem.mars.image.commands

This is a convenience command that calculates the gradient of an image.

GradientCommand() - Constructor for class de.mpg.biochem.mars.image.commands.GradientCommand

GroupIndices - Class in de.mpg.biochem.mars.table

groupPath(String...) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage

Creates a group path by concatenating all nodes with the node separator defined by MoleculeArchiveStorage.getGroupSeparator().

A B C D E F G H I J K L M N O P R S T U V W X Y