Hierarchy For All Packages

Package Hierarchies:

• de.mpg.biochem.mars.image,
• de.mpg.biochem.mars.image.commands,
• de.mpg.biochem.mars.io,
• de.mpg.biochem.mars.kcp,
• de.mpg.biochem.mars.kcp.commands,
• de.mpg.biochem.mars.metadata,
• de.mpg.biochem.mars.molecule,
• de.mpg.biochem.mars.molecule.commands,
• de.mpg.biochem.mars.object,
• de.mpg.biochem.mars.object.commands,
• de.mpg.biochem.mars.roi.commands,
• de.mpg.biochem.mars.swingUI,
• de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector,
• de.mpg.biochem.mars.table,
• de.mpg.biochem.mars.table.commands,
• de.mpg.biochem.mars.table.event,
• de.mpg.biochem.mars.util

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • org.scijava.util.SizableArrayList<E> (implements org.scijava.util.Sizable)
          • org.scijava.table.AbstractTable<C,T> (implements org.scijava.table.Table<C,T>)
            • de.mpg.biochem.mars.table.MarsTable (implements org.scijava.table.GenericTable, de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
  • org.scijava.AbstractContextual (implements org.scijava.Contextual)
    • org.scijava.widget.AbstractInputHarvester<P,W> (implements org.scijava.widget.InputHarvester<P,W>)
      • org.scijava.ui.AbstractInputHarvesterPlugin<P,W> (implements org.scijava.module.process.PreprocessorPlugin)
        • de.mpg.biochem.mars.swingUI.MarsLegacyInputHarvester
    • org.scijava.module.process.AbstractPostprocessorPlugin (implements org.scijava.module.process.PostprocessorPlugin)
      • de.mpg.biochem.mars.table.MarsTablePostprocessor
      • de.mpg.biochem.mars.molecule.MoleculeArchivePostprocessor
    • org.scijava.module.process.AbstractPreprocessorPlugin (implements org.scijava.module.process.PreprocessorPlugin)
      • de.mpg.biochem.mars.molecule.MoleculeArchivePreprocessor
    • org.scijava.plugin.AbstractRichPlugin (implements org.scijava.plugin.RichPlugin)
      • org.scijava.service.AbstractService (implements org.scijava.service.Service)
        • org.scijava.plugin.AbstractPTService<PT> (implements org.scijava.plugin.PTService<PT>)
          • de.mpg.biochem.mars.table.MarsTableService (implements net.imagej.ImageJService)
          • de.mpg.biochem.mars.molecule.MoleculeArchiveService (implements net.imagej.ImageJService)
      • org.scijava.plugin.AbstractTypedPlugin<D> (implements org.scijava.plugin.TypedPlugin<D>)
        • org.scijava.plugin.AbstractHandlerPlugin<D> (implements org.scijava.plugin.HandlerPlugin<D>)
          • org.scijava.io.AbstractIOPlugin<D> (implements org.scijava.io.IOPlugin<D>)
            • de.mpg.biochem.mars.table.MarsTableIOPlugin
            • de.mpg.biochem.mars.molecule.MoleculeArchiveIOPlugin
        • org.scijava.plugin.AbstractWrapperPlugin<D> (implements org.scijava.plugin.WrapperPlugin<D>)
          • org.scijava.widget.AbstractInputWidget<T,W> (implements org.scijava.widget.InputWidget<T,W>)
            • org.scijava.ui.AbstractUIInputWidget<T,W>
              • org.scijava.ui.swing.widget.SwingInputWidget<T>
                • de.mpg.biochem.mars.table.MarsTableWidget (implements java.awt.event.ActionListener, org.scijava.widget.InputWidget<T,W>)
                • de.mpg.biochem.mars.molecule.MoleculeArchiveWidget (implements java.awt.event.ActionListener, org.scijava.widget.InputWidget<T,W>)
    • org.scijava.event.SciJavaEvent
      • org.scijava.object.event.ObjectEvent
        • org.scijava.object.event.ObjectCreatedEvent
          • de.mpg.biochem.mars.table.event.MarsTableCreatedEvent
        • org.scijava.object.event.ObjectDeletedEvent
          • de.mpg.biochem.mars.table.event.MarsTableDeletedEvent
  • org.scijava.widget.AbstractInputPanel<P,W> (implements org.scijava.widget.InputPanel<P,W>)
    • de.mpg.biochem.mars.swingUI.MarsSwingInputPanel
  • de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord (implements de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
    • de.mpg.biochem.mars.molecule.AbstractMarsRecord (implements de.mpg.biochem.mars.molecule.MarsRecord)
      • de.mpg.biochem.mars.metadata.AbstractMarsMetadata (implements de.mpg.biochem.mars.metadata.MarsMetadata)
        • de.mpg.biochem.mars.metadata.MarsOMEMetadata
      • de.mpg.biochem.mars.molecule.AbstractMolecule (implements de.mpg.biochem.mars.molecule.Molecule)
        • de.mpg.biochem.mars.molecule.DefaultMolecule
        • de.mpg.biochem.mars.molecule.DnaMolecule
        • de.mpg.biochem.mars.object.MartianObject
        • de.mpg.biochem.mars.molecule.SingleMolecule
      • de.mpg.biochem.mars.metadata.OLDMarsMetadata (implements de.mpg.biochem.mars.metadata.MarsMetadata)
    • de.mpg.biochem.mars.molecule.AbstractMoleculeArchive<M,I,P,X> (implements de.mpg.biochem.mars.molecule.MoleculeArchive<M,I,P,X>)
      • de.mpg.biochem.mars.molecule.DefaultMoleculeArchive
      • de.mpg.biochem.mars.molecule.DnaMoleculeArchive
      • de.mpg.biochem.mars.object.ObjectArchive
      • de.mpg.biochem.mars.molecule.SingleMoleculeArchive
    • de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveIndex<M,I> (implements de.mpg.biochem.mars.molecule.MoleculeArchiveIndex<M,I>)
      • de.mpg.biochem.mars.molecule.DefaultMoleculeArchiveIndex
      • de.mpg.biochem.mars.molecule.DnaMoleculeArchiveIndex
      • de.mpg.biochem.mars.object.ObjectArchiveIndex
      • de.mpg.biochem.mars.molecule.SingleMoleculeArchiveIndex
    • de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties<M,I> (implements de.mpg.biochem.mars.molecule.MoleculeArchiveProperties<M,I>)
      • de.mpg.biochem.mars.molecule.DefaultMoleculeArchiveProperties
      • de.mpg.biochem.mars.molecule.DnaMoleculeArchiveProperties
      • de.mpg.biochem.mars.object.ObjectArchiveProperties
      • de.mpg.biochem.mars.molecule.SingleMoleculeArchiveProperties
    • de.mpg.biochem.mars.util.DefaultJsonConverter
    • de.mpg.biochem.mars.metadata.MarsBdvSource (implements de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
    • de.mpg.biochem.mars.util.MarsDocument (implements de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
    • de.mpg.biochem.mars.metadata.MarsOMEChannel
    • de.mpg.biochem.mars.metadata.MarsOMEImage (implements de.mpg.biochem.mars.metadata.GenericModel, de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
    • de.mpg.biochem.mars.metadata.MarsOMEPlane (implements de.mpg.biochem.mars.metadata.GenericModel)
    • de.mpg.biochem.mars.util.MarsPosition (implements de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
    • de.mpg.biochem.mars.util.MarsRegion (implements de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
    • de.mpg.biochem.mars.image.Peak (implements net.imglib2.RealLocalizable)
    • de.mpg.biochem.mars.image.PeakShape
  • org.scijava.module.AbstractModule (implements org.scijava.module.Module)
    • org.scijava.module.DefaultMutableModule (implements org.scijava.module.MutableModule)
      • org.scijava.command.DynamicCommand (implements org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual)
        • de.mpg.biochem.mars.molecule.commands.AddTimeCommand (implements org.scijava.command.Command)
        • de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand (implements org.scijava.command.Command)
        • de.mpg.biochem.mars.molecule.commands.BuildArchiveFromTableCommand (implements org.scijava.Initializable)
        • de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand (implements org.scijava.command.Command, org.scijava.Initializable)
        • de.mpg.biochem.mars.image.commands.DNAFinderCommand (implements org.scijava.command.Command, org.scijava.Initializable, org.scijava.command.Previewable)
        • de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand (implements org.scijava.command.Command)
        • de.mpg.biochem.mars.image.commands.GradientCommand (implements org.scijava.command.Command)
        • de.mpg.biochem.mars.table.commands.IJ1ResultsTableConversionCommand (implements org.scijava.Initializable)
        • de.mpg.biochem.mars.molecule.commands.ImportCloudArchiveCommand
        • de.mpg.biochem.mars.molecule.commands.ImportMoleculeArchiveCommand
        • de.mpg.biochem.mars.molecule.commands.ImportVirtualStoreCommand
        • de.mpg.biochem.mars.kcp.commands.KCPCommand (implements org.scijava.command.Command, org.scijava.Initializable)
        • de.mpg.biochem.mars.table.commands.MarsTableFilterCommand (implements org.scijava.Initializable)
        • de.mpg.biochem.mars.table.commands.MarsTableImporterCommand
        • de.mpg.biochem.mars.table.commands.MarsTableSorterCommand (implements org.scijava.Initializable)
        • de.mpg.biochem.mars.molecule.commands.MergeCommand
        • de.mpg.biochem.mars.molecule.commands.MergeVirtualStoresCommand
        • de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand (implements org.scijava.command.Command, org.scijava.Initializable)
        • de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand (implements org.scijava.command.Command, org.scijava.Initializable)
        • de.mpg.biochem.mars.object.commands.ObjectTrackerCommand (implements org.scijava.command.Command, org.scijava.Initializable, org.scijava.command.Previewable)
        • de.mpg.biochem.mars.image.commands.OverlayChannelsCommand (implements org.scijava.command.Command)
        • de.mpg.biochem.mars.image.commands.PeakFinderCommand (implements org.scijava.command.Command, org.scijava.Initializable, org.scijava.command.Previewable)
        • de.mpg.biochem.mars.image.commands.PeakTrackerCommand (implements org.scijava.command.Command, org.scijava.Initializable)
        • de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand (implements org.scijava.command.Command, org.scijava.Initializable)
        • de.mpg.biochem.mars.table.commands.ScijavaTableConversionCommand (implements org.scijava.Initializable)
        • de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand (implements org.scijava.command.Command, org.scijava.Initializable)
        • de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder (implements org.scijava.command.Command, org.scijava.Initializable)
        • de.mpg.biochem.mars.roi.commands.TransformROIsCommand (implements org.scijava.command.Command, org.scijava.Initializable, org.scijava.command.Previewable)
        • de.mpg.biochem.mars.molecule.commands.VarianceCalculatorCommand (implements org.scijava.command.Command, org.scijava.Initializable)
  • de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog (implements javax.swing.event.TreeWillExpandListener)
    • de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveOpenDialog
    • de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSaveDialog
  • de.mpg.biochem.mars.molecule.ArchiveUtils
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.tree.DefaultTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
            • de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeCellRenderer
  • de.mpg.biochem.mars.image.DNAFinder<T>
  • de.mpg.biochem.mars.image.DNASegment (implements net.imglib2.RealLocalizable)
  • de.mpg.biochem.mars.util.ForceCalculator (implements org.apache.commons.math3.analysis.UnivariateFunction)
  • de.mpg.biochem.mars.kcp.Gaussian
  • de.mpg.biochem.mars.util.Gaussian2D
  • de.mpg.biochem.mars.table.GroupIndices
  • de.mpg.biochem.mars.kcp.KCP
  • de.mpg.biochem.mars.kcp.KCPSegment
  • de.mpg.biochem.mars.util.LevenbergMarquardt
  • de.mpg.biochem.mars.util.LogBuilder
  • de.mpg.biochem.mars.util.MarsCollectors
  • de.mpg.biochem.mars.util.MarsFunctionFitter
  • de.mpg.biochem.mars.image.MarsImageUtils
  • de.mpg.biochem.mars.util.MarsMath
  • de.mpg.biochem.mars.metadata.MarsOMEUtils
  • de.mpg.biochem.mars.table.MarsTableRow (implements java.util.Iterator<E>)
  • de.mpg.biochem.mars.table.MarsTableRowCollector (implements java.util.stream.Collector<T,A,R>)
  • de.mpg.biochem.mars.util.MarsUtil
  • de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3KeyValueAccess
  • de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source (implements de.mpg.biochem.mars.io.MoleculeArchiveSource)
  • de.mpg.biochem.mars.io.MoleculeArchiveFSSource (implements de.mpg.biochem.mars.io.MoleculeArchiveSource)
  • de.mpg.biochem.mars.io.MoleculeArchiveIOFactory
  • de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSelection
  • de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode
    • de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode (implements javax.swing.tree.MutableTreeNode)
  • de.mpg.biochem.mars.util.MotionBlurForceCalculator (implements org.apache.commons.math3.analysis.UnivariateFunction)
  • de.mpg.biochem.mars.image.PeakFitter<T>
  • de.mpg.biochem.mars.image.PeakLink
  • de.mpg.biochem.mars.image.PeakPixel (implements net.imglib2.RealLocalizable)
  • de.mpg.biochem.mars.image.PeakTracker
  • de.mpg.biochem.mars.kcp.SegmentDistributionBuilder

Interface Hierarchy

• java.lang.AutoCloseable
  • java.io.Closeable
    • de.mpg.biochem.mars.io.LockedChannel
  • de.mpg.biochem.mars.io.MoleculeArchiveStorage
    • de.mpg.biochem.mars.io.MoleculeArchiveSource
• de.mpg.biochem.mars.metadata.GenericModel
• de.mpg.biochem.mars.molecule.JsonConvertibleRecord
  • de.mpg.biochem.mars.metadata.MarsMetadata (also extends de.mpg.biochem.mars.molecule.MarsRecord)
  • de.mpg.biochem.mars.molecule.MarsRecord
    • de.mpg.biochem.mars.metadata.MarsMetadata (also extends de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
    • de.mpg.biochem.mars.molecule.Molecule (also extends de.mpg.biochem.mars.molecule.JsonConvertibleRecord)
  • de.mpg.biochem.mars.molecule.Molecule (also extends de.mpg.biochem.mars.molecule.MarsRecord)
  • de.mpg.biochem.mars.molecule.MoleculeArchive<M,I,P,X>
  • de.mpg.biochem.mars.molecule.MoleculeArchiveIndex<M,I>
  • de.mpg.biochem.mars.molecule.MoleculeArchiveProperties<M,I>
• de.mpg.biochem.mars.util.MarsFunction
• de.mpg.biochem.mars.table.MarsTableWindow
• de.mpg.biochem.mars.util.MarsUtil.ThrowingConsumer<T,E>
• de.mpg.biochem.mars.molecule.MoleculeArchiveWindow