- dataTable - Variable in class de.mpg.biochem.mars.metadata.OLDMarsMetadata
-
- de.mpg.biochem.mars.image - package de.mpg.biochem.mars.image
-
- de.mpg.biochem.mars.image.commands - package de.mpg.biochem.mars.image.commands
-
- de.mpg.biochem.mars.io - package de.mpg.biochem.mars.io
-
- de.mpg.biochem.mars.kcp - package de.mpg.biochem.mars.kcp
-
- de.mpg.biochem.mars.kcp.commands - package de.mpg.biochem.mars.kcp.commands
-
- de.mpg.biochem.mars.metadata - package de.mpg.biochem.mars.metadata
-
- de.mpg.biochem.mars.molecule - package de.mpg.biochem.mars.molecule
-
- de.mpg.biochem.mars.molecule.commands - package de.mpg.biochem.mars.molecule.commands
-
- de.mpg.biochem.mars.object - package de.mpg.biochem.mars.object
-
- de.mpg.biochem.mars.object.commands - package de.mpg.biochem.mars.object.commands
-
- de.mpg.biochem.mars.roi.commands - package de.mpg.biochem.mars.roi.commands
-
- de.mpg.biochem.mars.swingUI - package de.mpg.biochem.mars.swingUI
-
- de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector - package de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector
-
- de.mpg.biochem.mars.table - package de.mpg.biochem.mars.table
-
- de.mpg.biochem.mars.table.commands - package de.mpg.biochem.mars.table.commands
-
- de.mpg.biochem.mars.table.event - package de.mpg.biochem.mars.table.event
-
- de.mpg.biochem.mars.util - package de.mpg.biochem.mars.util
-
- deepList(String, Predicate<String>) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage
-
Recursively list all groups and datasets in the given path.
- deepList(String) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage
-
Recursively list all groups and datasets in the given path.
- deepList(MoleculeArchiveStorage, String, Predicate<String>) - Static method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage
-
Helper method to recursively list all groups and datasets.
- deepList(String, Predicate<String>, ExecutorService) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage
-
Recursively list all groups (including datasets) in the given group, in
parallel, using the given ExecutorService.
- deepList(String, ExecutorService) - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage
-
Recursively list all groups (including datasets) in the given group, in
parallel, using the given ExecutorService.
- deepListHelper(MoleculeArchiveStorage, String, Predicate<String>, ExecutorService, LinkedBlockingQueue<Future<String>>) - Static method in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage
-
Helper method for parallel deep listing.
- DefaultJsonConverter - Class in de.mpg.biochem.mars.util
-
- DefaultJsonConverter() - Constructor for class de.mpg.biochem.mars.util.DefaultJsonConverter
-
- DefaultMolecule - Class in de.mpg.biochem.mars.molecule
-
- DefaultMolecule() - Constructor for class de.mpg.biochem.mars.molecule.DefaultMolecule
-
- DefaultMolecule(JsonParser) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMolecule
-
- DefaultMolecule(String) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMolecule
-
- DefaultMolecule(String, MarsTable) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMolecule
-
- DefaultMoleculeArchive - Class in de.mpg.biochem.mars.molecule
-
- DefaultMoleculeArchive(String) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchive
-
Creates an empty DefaultMoleculeArchive with the given name.
- DefaultMoleculeArchive(File) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchive
-
Constructor for loading a MoleculeArchive.
- DefaultMoleculeArchive(String, File) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchive
-
Constructor for loading a MoleculeArchive.
- DefaultMoleculeArchive(String, MarsTable) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchive
-
Constructor for building a molecule archive from a MarsTable.
- DefaultMoleculeArchive(URI) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchive
-
Constructor for loading a MoleculeArchive.
- DefaultMoleculeArchive(MoleculeArchiveSource) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchive
-
Constructor for loading a MoleculeArchive from a MoleculeArchiveSource.
- DefaultMoleculeArchiveIndex - Class in de.mpg.biochem.mars.molecule
-
- DefaultMoleculeArchiveIndex() - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchiveIndex
-
- DefaultMoleculeArchiveIndex(JsonParser) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchiveIndex
-
- DefaultMoleculeArchiveProperties - Class in de.mpg.biochem.mars.molecule
-
- DefaultMoleculeArchiveProperties() - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchiveProperties
-
- DefaultMoleculeArchiveProperties(JsonParser) - Constructor for class de.mpg.biochem.mars.molecule.DefaultMoleculeArchiveProperties
-
- delete(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3KeyValueAccess
-
- deleteMetadatasWithTag(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Removes all MarsMetadata records with the tag provided.
- deleteMetadatasWithTag(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Removes all metadata records with the tag provided.
- deleteMoleculesWithTag(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Removes all molecule records with the tag provided.
- deleteMoleculesWithTag(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Removes all molecule records with the tag provided.
- deleteRows(int[]) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Remove rows at the positions specified in the ordered list given.
- deleteRows(List<Integer>) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Remove rows at the positions specified in the ordered list given.
- detectBtn - Variable in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog
-
- detectEncoding(InputStream) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
- dialog - Variable in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog
-
- dimDelimeter - Static variable in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeCellRenderer
-
- DNAFinder<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> - Class in de.mpg.biochem.mars.image
-
- DNAFinder(OpService) - Constructor for class de.mpg.biochem.mars.image.DNAFinder
-
- DNAFinderCommand - Class in de.mpg.biochem.mars.image.commands
-
This command finds the location of vertically aligned DNA molecules.
- DNAFinderCommand() - Constructor for class de.mpg.biochem.mars.image.commands.DNAFinderCommand
-
- DnaMolecule - Class in de.mpg.biochem.mars.molecule
-
- DnaMolecule() - Constructor for class de.mpg.biochem.mars.molecule.DnaMolecule
-
- DnaMolecule(JsonParser) - Constructor for class de.mpg.biochem.mars.molecule.DnaMolecule
-
- DnaMolecule(String) - Constructor for class de.mpg.biochem.mars.molecule.DnaMolecule
-
- DnaMolecule(String, MarsTable) - Constructor for class de.mpg.biochem.mars.molecule.DnaMolecule
-
- DnaMoleculeArchive - Class in de.mpg.biochem.mars.molecule
-
- DnaMoleculeArchive(String) - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchive
-
- DnaMoleculeArchive(File) - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchive
-
- DnaMoleculeArchive(String, MarsTable) - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchive
-
- DnaMoleculeArchive(String, File) - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchive
-
- DnaMoleculeArchive(URI) - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchive
-
Constructor for loading a MoleculeArchive.
- DnaMoleculeArchive(MoleculeArchiveSource) - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchive
-
Constructor for loading a MoleculeArchive from a MoleculeArchiveSource.
- DnaMoleculeArchiveIndex - Class in de.mpg.biochem.mars.molecule
-
- DnaMoleculeArchiveIndex() - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchiveIndex
-
- DnaMoleculeArchiveIndex(JsonParser) - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchiveIndex
-
- DnaMoleculeArchiveProperties - Class in de.mpg.biochem.mars.molecule
-
- DnaMoleculeArchiveProperties() - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchiveProperties
-
- DnaMoleculeArchiveProperties(JsonParser) - Constructor for class de.mpg.biochem.mars.molecule.DnaMoleculeArchiveProperties
-
- DNASegment - Class in de.mpg.biochem.mars.image
-
- DNASegment(double, double, double, double) - Constructor for class de.mpg.biochem.mars.image.DNASegment
-
- documents - Variable in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties
-
- dogFilter(RandomAccessibleInterval<T>, double) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
-
This method uses the OpService to apply a Difference of Gaussian (DoG)
filter on a 2D image provided.
- dogFilter(RandomAccessibleInterval<T>, double, int) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
-
This method uses the OpService to apply a Difference of Gaussian (DoG)
filter on a 2D image provided.
- doRefresh() - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveWidget
-
- doRefresh() - Method in class de.mpg.biochem.mars.table.MarsTableWidget
-
- DriftCorrectorCommand - Class in de.mpg.biochem.mars.molecule.commands
-
- DriftCorrectorCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.DriftCorrectorCommand
-
- dumpJSON() - Method in class de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord
-
Get the record in Json string format.
- dumpJSON() - Method in interface de.mpg.biochem.mars.molecule.JsonConvertibleRecord
-
Get the record in Json string format.
- dumpJSON() - Method in class de.mpg.biochem.mars.table.MarsTable
-
Get the record in Json string format.
- dumpJSON(MarsUtil.ThrowingConsumer<JsonGenerator, IOException>) - Static method in class de.mpg.biochem.mars.util.MarsUtil
-
Return Json String in pretty print format.
- duration - Variable in class de.mpg.biochem.mars.kcp.Gaussian
-