A B C D E F G H I J K L M N O P R S T U V W X Y

F

factor - Variable in class de.mpg.biochem.mars.util.LevenbergMarquardt

fileExtension - Variable in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source

find_group_indices(MarsTable, String) - Static method in class de.mpg.biochem.mars.table.MarsTableService

findDNAs(RandomAccessibleInterval<T>, IterableRegion<BoolType>, int) - Method in class de.mpg.biochem.mars.image.DNAFinder

findDNAs(RandomAccessibleInterval<T>, IterableRegion<BoolType>, int, int) - Method in class de.mpg.biochem.mars.image.DNAFinder

findDNAs(RandomAccessibleInterval<T>, List<IterableRegion<BoolType>>, int) - Method in class de.mpg.biochem.mars.image.DNAFinder

findDNAs(RandomAccessibleInterval<T>, List<IterableRegion<BoolType>>, int, int) - Method in class de.mpg.biochem.mars.image.DNAFinder

findDNAs(RandomAccessibleInterval<T>, Interval, int, int) - Method in class de.mpg.biochem.mars.image.DNAFinder

findPeaks(IterableInterval<T>, int, double, int, boolean) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils

This method returned a list of peaks in the 2D image within the interval and iterable interval specified that are above the pixel value threshold specified.

findPeaks(RandomAccessible<T>, Interval, int, double, int, boolean) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils

This method returned a list of peaks in the 2D image within the interval specified that are above the pixel value threshold specified.

findPeaks(Cursor<T>, int, double, int, boolean) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils

This method returned a list of peaks in the 2D image using the cursor specified that are above the pixel value threshold specified.

finisher() - Method in class de.mpg.biochem.mars.table.MarsTableRowCollector

fitPeak(RandomAccessible<T>, double[], double[], Rectangle) - Method in class de.mpg.biochem.mars.image.PeakFitter

fitPeak(RandomAccessible<T>, double[], double[], Rectangle, boolean) - Method in class de.mpg.biochem.mars.image.PeakFitter

fitPeak(RandomAccessible<T>, double[], double[], Rectangle, double, boolean) - Method in class de.mpg.biochem.mars.image.PeakFitter

fitPeaks(RandomAccessible<T>, Interval, List<Peak>, int, double, boolean, double) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils

Given a 2D image and a list of peak positions in pixels, this function performs subpixel 2D gaussian fitting and updates the peak positions accordingly.

fitPeaks(RandomAccessible<T>, Interval, List<Peak>, int, double, double, boolean) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils

Given a 2D image and a list of peak positions in pixels, this function performs subpixel 2D gaussian fitting and updates the peak positions accordingly.

flattenTree(MoleculeArchiveTreeNode) - Static method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

fnv1a_64(byte[]) - Static method in class de.mpg.biochem.mars.util.MarsMath

ForceCalculator - Class in de.mpg.biochem.mars.util

ForceCalculator(double, double) - Constructor for class de.mpg.biochem.mars.util.ForceCalculator

ForceCalculator(double, double, double) - Constructor for class de.mpg.biochem.mars.util.ForceCalculator

fromFlatList(MoleculeArchiveSwingTreeNode, String[], String) - Static method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode

fromFlatList(String, String[], String) - Static method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

Generates a tree based on the output of MoleculeArchiveStorage.deepList(java.lang.String, java.util.function.Predicate<java.lang.String>), returning the root node.

fromFlatList(MoleculeArchiveTreeNode, String[], String) - Static method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode

Generates a tree based on the output of MoleculeArchiveStorage.deepList(java.lang.String, java.util.function.Predicate<java.lang.String>), returning the root node.

fromJSON(JsonParser) - Method in class de.mpg.biochem.mars.molecule.AbstractJsonConvertibleRecord

Read a record from JSON.

fromJSON(JsonParser) - Method in interface de.mpg.biochem.mars.molecule.JsonConvertibleRecord

Deserializes an instance of the implementing class from JSON using the JsonParser provided.

fromJSON(JsonParser) - Method in class de.mpg.biochem.mars.table.MarsTable

JSON deserialization of table values.

A B C D E F G H I J K L M N O P R S T U V W X Y