- idGenerator - Static variable in class de.mpg.biochem.mars.image.Peak
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- IJ1ResultsTableConversionCommand - Class in de.mpg.biochem.mars.table.commands
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- IJ1ResultsTableConversionCommand() - Constructor for class de.mpg.biochem.mars.table.commands.IJ1ResultsTableConversionCommand
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- images - Variable in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata
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- images() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata
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- images() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata
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- images() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata
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- ImportCloudArchiveCommand - Class in de.mpg.biochem.mars.molecule.commands
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- ImportCloudArchiveCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.ImportCloudArchiveCommand
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- ImportMoleculeArchiveCommand - Class in de.mpg.biochem.mars.molecule.commands
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- ImportMoleculeArchiveCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.ImportMoleculeArchiveCommand
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- ImportVirtualStoreCommand - Class in de.mpg.biochem.mars.molecule.commands
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- ImportVirtualStoreCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.ImportVirtualStoreCommand
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- INDEXES_FILE_NAME - Static variable in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
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- initialContainerPath - Variable in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog
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- initialize() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand
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- initialize() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand
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- initialize() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand
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- initialize() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand
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- initialize() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand
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- initialize() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand
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- initialize() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand
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- initialize() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand
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- initialize() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand
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- initialize() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder
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- initialize() - Method in class de.mpg.biochem.mars.molecule.commands.BuildArchiveFromTableCommand
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- initialize() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand
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- initialize() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand
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- initialize() - Method in class de.mpg.biochem.mars.molecule.commands.VarianceCalculatorCommand
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- initialize() - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveService
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- initialize() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand
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- initialize() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand
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- initialize() - Method in class de.mpg.biochem.mars.table.commands.IJ1ResultsTableConversionCommand
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- initialize() - Method in class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand
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- initialize() - Method in class de.mpg.biochem.mars.table.commands.MarsTableSorterCommand
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- initialize() - Method in class de.mpg.biochem.mars.table.commands.ScijavaTableConversionCommand
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- initialize() - Method in class de.mpg.biochem.mars.table.MarsTableService
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- initializeLocation() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
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- initializeLocation() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource
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- initializeLocation() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
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- innerOffsets(int) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
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This method creates a list of integer x, y offsets from a central point
based on the provided radius.
- inputSchema - Variable in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties
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- insert(MutableTreeNode, int) - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode
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- integratePeaks(RandomAccessible<T>, Interval, List<Peak>, int, int) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
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This method integrates the intensity of peaks in the 2D image provided.
- integratePeaks(RandomAccessible<T>, Interval, List<Peak>, int, int, boolean) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
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This method integrates the intensity of peaks in the 2D image provided.
- INTENSITY - Static variable in class de.mpg.biochem.mars.image.Peak
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- INTENSITY_VARIANCE - Static variable in class de.mpg.biochem.mars.image.DNASegment
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- intervalContains(Interval, double...) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
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- isDirectory(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3KeyValueAccess
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Test whether the path is a directory.
- isFile(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3KeyValueAccess
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Test whether the path is a file.
- isLeaf() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode
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- isN5() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource
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- isReachable() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
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- isReachable() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource
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- isReachable() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
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- isValid() - Method in class de.mpg.biochem.mars.image.Peak
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- isVirtual() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
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- isVirtual() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource
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- isVirtual() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
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- isVirtual() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
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True if the archive is virtual, false if not.
- isVirtual() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
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True if the archive is virtual, false if not.
- isVirtualArchive(File) - Static method in class de.mpg.biochem.mars.molecule.ArchiveUtils
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- isVirtualArchive(URI) - Static method in class de.mpg.biochem.mars.molecule.ArchiveUtils
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- isVirtualArchive(String) - Static method in class de.mpg.biochem.mars.molecule.ArchiveUtils
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- iterations - Variable in class de.mpg.biochem.mars.util.LevenbergMarquardt
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- iterations - Variable in class de.mpg.biochem.mars.util.MarsFunctionFitter
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