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I

idGenerator - Static variable in class de.mpg.biochem.mars.image.Peak
 
IJ1ResultsTableConversionCommand - Class in de.mpg.biochem.mars.table.commands
 
IJ1ResultsTableConversionCommand() - Constructor for class de.mpg.biochem.mars.table.commands.IJ1ResultsTableConversionCommand
 
images - Variable in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata
 
images() - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata
 
images() - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata
 
images() - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata
 
ImportCloudArchiveCommand - Class in de.mpg.biochem.mars.molecule.commands
 
ImportCloudArchiveCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.ImportCloudArchiveCommand
 
ImportMoleculeArchiveCommand - Class in de.mpg.biochem.mars.molecule.commands
 
ImportMoleculeArchiveCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.ImportMoleculeArchiveCommand
 
ImportVirtualStoreCommand - Class in de.mpg.biochem.mars.molecule.commands
 
ImportVirtualStoreCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.ImportVirtualStoreCommand
 
INDEXES_FILE_NAME - Static variable in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
 
initialContainerPath - Variable in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog
 
initialize() - Method in class de.mpg.biochem.mars.image.commands.BeamProfileCorrectionCommand
 
initialize() - Method in class de.mpg.biochem.mars.image.commands.DNAFinderCommand
 
initialize() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand
 
initialize() - Method in class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand
 
initialize() - Method in class de.mpg.biochem.mars.image.commands.OverlayChannelsCommand
 
initialize() - Method in class de.mpg.biochem.mars.image.commands.PeakFinderCommand
 
initialize() - Method in class de.mpg.biochem.mars.image.commands.PeakTrackerCommand
 
initialize() - Method in class de.mpg.biochem.mars.kcp.commands.KCPCommand
 
initialize() - Method in class de.mpg.biochem.mars.kcp.commands.SigmaCalculatorCommand
 
initialize() - Method in class de.mpg.biochem.mars.kcp.commands.SingleChangePointFinder
 
initialize() - Method in class de.mpg.biochem.mars.molecule.commands.BuildArchiveFromTableCommand
 
initialize() - Method in class de.mpg.biochem.mars.molecule.commands.BuildDnaArchiveCommand
 
initialize() - Method in class de.mpg.biochem.mars.molecule.commands.RegionDifferenceCalculatorCommand
 
initialize() - Method in class de.mpg.biochem.mars.molecule.commands.VarianceCalculatorCommand
 
initialize() - Method in class de.mpg.biochem.mars.molecule.MoleculeArchiveService
 
initialize() - Method in class de.mpg.biochem.mars.object.commands.ObjectTrackerCommand
 
initialize() - Method in class de.mpg.biochem.mars.roi.commands.TransformROIsCommand
 
initialize() - Method in class de.mpg.biochem.mars.table.commands.IJ1ResultsTableConversionCommand
 
initialize() - Method in class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand
 
initialize() - Method in class de.mpg.biochem.mars.table.commands.MarsTableSorterCommand
 
initialize() - Method in class de.mpg.biochem.mars.table.commands.ScijavaTableConversionCommand
 
initialize() - Method in class de.mpg.biochem.mars.table.MarsTableService
 
initializeLocation() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
 
initializeLocation() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource
 
initializeLocation() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
 
innerOffsets(int) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
This method creates a list of integer x, y offsets from a central point based on the provided radius.
inputSchema - Variable in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties
 
insert(MutableTreeNode, int) - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode
 
integratePeaks(RandomAccessible<T>, Interval, List<Peak>, int, int) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
This method integrates the intensity of peaks in the 2D image provided.
integratePeaks(RandomAccessible<T>, Interval, List<Peak>, int, int, boolean) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
This method integrates the intensity of peaks in the 2D image provided.
INTENSITY - Static variable in class de.mpg.biochem.mars.image.Peak
 
INTENSITY_VARIANCE - Static variable in class de.mpg.biochem.mars.image.DNASegment
 
intervalContains(Interval, double...) - Static method in class de.mpg.biochem.mars.image.MarsImageUtils
 
isDirectory(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3KeyValueAccess
Test whether the path is a directory.
isFile(String) - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3KeyValueAccess
Test whether the path is a file.
isLeaf() - Method in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode
 
isN5() - Method in class de.mpg.biochem.mars.metadata.MarsBdvSource
 
isReachable() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
 
isReachable() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource
 
isReachable() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
 
isValid() - Method in class de.mpg.biochem.mars.image.Peak
 
isVirtual() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
 
isVirtual() - Method in class de.mpg.biochem.mars.io.MoleculeArchiveFSSource
 
isVirtual() - Method in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
 
isVirtual() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
True if the archive is virtual, false if not.
isVirtual() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
True if the archive is virtual, false if not.
isVirtualArchive(File) - Static method in class de.mpg.biochem.mars.molecule.ArchiveUtils
 
isVirtualArchive(URI) - Static method in class de.mpg.biochem.mars.molecule.ArchiveUtils
 
isVirtualArchive(String) - Static method in class de.mpg.biochem.mars.molecule.ArchiveUtils
 
iterations - Variable in class de.mpg.biochem.mars.util.LevenbergMarquardt
 
iterations - Variable in class de.mpg.biochem.mars.util.MarsFunctionFitter
 
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