- mad(String) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Calculates the median absolute deviation.
- mad(String, String, double, double) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Calculates the median absolute deviation of the values for the madColumn
within the range given for a rowSelectionColumn (inclusive of bounds).
- main(String[]) - Static method in class de.mpg.biochem.mars.util.LevenbergMarquardt
-
- MarsBdvSource - Class in de.mpg.biochem.mars.metadata
-
- MarsBdvSource(String) - Constructor for class de.mpg.biochem.mars.metadata.MarsBdvSource
-
- MarsBdvSource(JsonParser) - Constructor for class de.mpg.biochem.mars.metadata.MarsBdvSource
-
- MarsCollectors - Class in de.mpg.biochem.mars.util
-
- MarsCollectors() - Constructor for class de.mpg.biochem.mars.util.MarsCollectors
-
- MarsDocument - Class in de.mpg.biochem.mars.util
-
- MarsDocument(String) - Constructor for class de.mpg.biochem.mars.util.MarsDocument
-
- MarsDocument(String, String) - Constructor for class de.mpg.biochem.mars.util.MarsDocument
-
- MarsDocument(JsonParser) - Constructor for class de.mpg.biochem.mars.util.MarsDocument
-
- MarsFunction - Interface in de.mpg.biochem.mars.util
-
- MarsFunctionFitter - Class in de.mpg.biochem.mars.util
-
- MarsFunctionFitter(MarsFunction, int) - Constructor for class de.mpg.biochem.mars.util.MarsFunctionFitter
-
- MarsFunctionFitter(MarsFunction, int, double, int) - Constructor for class de.mpg.biochem.mars.util.MarsFunctionFitter
-
- MarsImageUtils - Class in de.mpg.biochem.mars.image
-
Common utility functions for DoG filtering, peak finding, peak fitting and
related operations.
- MarsImageUtils() - Constructor for class de.mpg.biochem.mars.image.MarsImageUtils
-
- MarsLegacyInputHarvester - Class in de.mpg.biochem.mars.swingUI
-
Trivial Legacy extension of the
SwingInputHarvester.
- MarsLegacyInputHarvester() - Constructor for class de.mpg.biochem.mars.swingUI.MarsLegacyInputHarvester
-
- MarsMath - Class in de.mpg.biochem.mars.util
-
- MarsMath() - Constructor for class de.mpg.biochem.mars.util.MarsMath
-
- MarsMetadata - Interface in de.mpg.biochem.mars.metadata
-
MarsMetadata records store image metadata and all information about
specific data collections, imaging settings, frame timing.
- MarsOMEChannel - Class in de.mpg.biochem.mars.metadata
-
- MarsOMEChannel(OMEXMLMetadata, int, int) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEChannel
-
- MarsOMEChannel() - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEChannel
-
- MarsOMEChannel(JsonParser) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEChannel
-
- MarsOMEImage - Class in de.mpg.biochem.mars.metadata
-
- MarsOMEImage() - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEImage
-
- MarsOMEImage(JsonParser) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEImage
-
- MarsOMEImage(int, OMEXMLMetadata) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEImage
-
- MarsOMEMetadata - Class in de.mpg.biochem.mars.metadata
-
- MarsOMEMetadata() - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEMetadata
-
- MarsOMEMetadata(String) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEMetadata
-
- MarsOMEMetadata(String, OMEXMLMetadata) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEMetadata
-
- MarsOMEMetadata(JsonParser) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEMetadata
-
- MarsOMEPlane - Class in de.mpg.biochem.mars.metadata
-
- MarsOMEPlane() - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEPlane
-
- MarsOMEPlane(MarsOMEImage, OMEXMLMetadata, int, int) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEPlane
-
- MarsOMEPlane(MarsOMEImage, int, int, NonNegativeInteger, NonNegativeInteger, NonNegativeInteger) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEPlane
-
- MarsOMEPlane(JsonParser, MarsOMEImage) - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEPlane
-
- MarsOMEUtils - Class in de.mpg.biochem.mars.metadata
-
- MarsOMEUtils() - Constructor for class de.mpg.biochem.mars.metadata.MarsOMEUtils
-
- MarsPosition - Class in de.mpg.biochem.mars.util
-
This class provides a simple position definition.
- MarsPosition(String) - Constructor for class de.mpg.biochem.mars.util.MarsPosition
-
Constructor for creating a plot position of a given name with default
settings.
- MarsPosition(JsonParser) - Constructor for class de.mpg.biochem.mars.util.MarsPosition
-
Constructor for creating a plot position given a json stream.
- MarsPosition(String, String, double, String, double) - Constructor for class de.mpg.biochem.mars.util.MarsPosition
-
Constructor for creating a plot region using known parameters.
- MarsRecord - Interface in de.mpg.biochem.mars.molecule
-
Basic interface for Mars records.
- MarsRegion - Class in de.mpg.biochem.mars.util
-
This class provides a simple region definition.
- MarsRegion(String) - Constructor for class de.mpg.biochem.mars.util.MarsRegion
-
Constructor for creating a plot region of a given name with default
settings.
- MarsRegion(JsonParser) - Constructor for class de.mpg.biochem.mars.util.MarsRegion
-
Constructor for creating a plot region given a json stream.
- MarsRegion(String, String, double, double, String, double) - Constructor for class de.mpg.biochem.mars.util.MarsRegion
-
Constructor for creating a plot region using known parameters.
- MarsSwingInputPanel - Class in de.mpg.biochem.mars.swingUI
-
Swing implementation of InputPanel.
- MarsSwingInputPanel() - Constructor for class de.mpg.biochem.mars.swingUI.MarsSwingInputPanel
-
- MarsTable - Class in de.mpg.biochem.mars.table
-
Mars implementation of a scijava results table.
- MarsTable() - Constructor for class de.mpg.biochem.mars.table.MarsTable
-
Creates an empty results table.
- MarsTable(String) - Constructor for class de.mpg.biochem.mars.table.MarsTable
-
Creates an empty results table with the name given.
- MarsTable(String, String...) - Constructor for class de.mpg.biochem.mars.table.MarsTable
-
Creates a results table with the name given and column headers.
- MarsTable(File) - Constructor for class de.mpg.biochem.mars.table.MarsTable
-
Opens a results table from the file provided.
- MarsTable(File, StatusService) - Constructor for class de.mpg.biochem.mars.table.MarsTable
-
Opens a results table from the file provided.
- MarsTable(int, int) - Constructor for class de.mpg.biochem.mars.table.MarsTable
-
Creates a results table with the given row and column dimensions.
- MarsTable(Table<Column<?>, Object>) - Constructor for class de.mpg.biochem.mars.table.MarsTable
-
Creates a results table with the given a scijava Table.
- MarsTable(String, int, int) - Constructor for class de.mpg.biochem.mars.table.MarsTable
-
Creates a results table with the given name and column and row dimensions.
- MarsTableCreatedEvent - Class in de.mpg.biochem.mars.table.event
-
- MarsTableCreatedEvent(Object) - Constructor for class de.mpg.biochem.mars.table.event.MarsTableCreatedEvent
-
- MarsTableDeletedEvent - Class in de.mpg.biochem.mars.table.event
-
- MarsTableDeletedEvent(Object) - Constructor for class de.mpg.biochem.mars.table.event.MarsTableDeletedEvent
-
- MarsTableFilterCommand - Class in de.mpg.biochem.mars.table.commands
-
- MarsTableFilterCommand() - Constructor for class de.mpg.biochem.mars.table.commands.MarsTableFilterCommand
-
- MarsTableImporterCommand - Class in de.mpg.biochem.mars.table.commands
-
- MarsTableImporterCommand() - Constructor for class de.mpg.biochem.mars.table.commands.MarsTableImporterCommand
-
- MarsTableIOPlugin - Class in de.mpg.biochem.mars.table
-
- MarsTableIOPlugin() - Constructor for class de.mpg.biochem.mars.table.MarsTableIOPlugin
-
- MarsTablePostprocessor - Class in de.mpg.biochem.mars.table
-
- MarsTablePostprocessor() - Constructor for class de.mpg.biochem.mars.table.MarsTablePostprocessor
-
- MarsTableRow - Class in de.mpg.biochem.mars.table
-
- MarsTableRow(MarsTable) - Constructor for class de.mpg.biochem.mars.table.MarsTableRow
-
- MarsTableRowCollector - Class in de.mpg.biochem.mars.table
-
- MarsTableRowCollector(MarsTable) - Constructor for class de.mpg.biochem.mars.table.MarsTableRowCollector
-
- MarsTableService - Class in de.mpg.biochem.mars.table
-
- MarsTableService() - Constructor for class de.mpg.biochem.mars.table.MarsTableService
-
- MarsTableSorterCommand - Class in de.mpg.biochem.mars.table.commands
-
- MarsTableSorterCommand() - Constructor for class de.mpg.biochem.mars.table.commands.MarsTableSorterCommand
-
- MarsTableWidget - Class in de.mpg.biochem.mars.table
-
Swing implementation of multiple choice selector widget for MarsTable.
- MarsTableWidget() - Constructor for class de.mpg.biochem.mars.table.MarsTableWidget
-
- MarsTableWindow - Interface in de.mpg.biochem.mars.table
-
- MarsUtil - Class in de.mpg.biochem.mars.util
-
- MarsUtil() - Constructor for class de.mpg.biochem.mars.util.MarsUtil
-
- MarsUtil.ThrowingConsumer<T,E extends java.lang.Exception> - Interface in de.mpg.biochem.mars.util
-
- MartianObject - Class in de.mpg.biochem.mars.object
-
- MartianObject() - Constructor for class de.mpg.biochem.mars.object.MartianObject
-
- MartianObject(JsonParser) - Constructor for class de.mpg.biochem.mars.object.MartianObject
-
- MartianObject(String) - Constructor for class de.mpg.biochem.mars.object.MartianObject
-
- MartianObject(String, MarsTable) - Constructor for class de.mpg.biochem.mars.object.MartianObject
-
- max(String) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Finds the maximum of the column values.
- max(String, String, double, double) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Finds the max of the values for the maxColumn within the range given for a
rowSelectionColumn (inclusive of bounds).
- maxIterations - Variable in class de.mpg.biochem.mars.util.LevenbergMarquardt
-
- mean(String) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Calculates the mean of the values for the column given.
- mean(String, String, double, double) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Calculates the mean of the values for the meanColumn within the range given
for a rowSelectionColumn (inclusive of bounds).
- MEAN_BACKGROUND - Static variable in class de.mpg.biochem.mars.image.Peak
-
- median(String) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Calculates the median of the column values.
- median(String, String, double, double) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Finds the median of the values for the medianColumn within the range given
for a rowSelectionColumn (inclusive of bounds).
- MEDIAN_BACKGROUND - Static variable in class de.mpg.biochem.mars.image.Peak
-
- MEDIAN_INTENSITY - Static variable in class de.mpg.biochem.mars.image.DNASegment
-
- merge(MarsMetadata) - Method in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata
-
Used to merge another MarsMetadata record into this one.
- merge(MarsMetadata) - Method in interface de.mpg.biochem.mars.metadata.MarsMetadata
-
Used to merge another MarsMetadata record into this one.
- merge(MarsMetadata) - Method in class de.mpg.biochem.mars.metadata.OLDMarsMetadata
-
- merge(MarsRecord) - Method in class de.mpg.biochem.mars.molecule.AbstractMarsRecord
-
Merge another MarsRecord into this one.
- merge(Molecule) - Method in class de.mpg.biochem.mars.molecule.AbstractMolecule
-
Used to merge another molecule record into this one.
- merge(MoleculeArchiveProperties<?, ?>, String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties
-
Used to during merge MoleculeArchive merge events to merge the properties
of another archive into this one.
- merge(MoleculeArchiveProperties<?, ?>, String) - Method in class de.mpg.biochem.mars.molecule.DefaultMoleculeArchiveProperties
-
- merge(MarsRecord) - Method in interface de.mpg.biochem.mars.molecule.MarsRecord
-
Merge another MarsRecord into this one.
- merge(Molecule) - Method in interface de.mpg.biochem.mars.molecule.Molecule
-
Used to merge another molecule record into this one.
- merge(MoleculeArchiveProperties<?, ?>, String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchiveProperties
-
Used to during merge MoleculeArchive merge events to merge the properties
of another archive into this one.
- merge(MartianObject) - Method in class de.mpg.biochem.mars.object.MartianObject
-
Used to merge another MartianObject record into this one.
- MergeCommand - Class in de.mpg.biochem.mars.molecule.commands
-
- MergeCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.MergeCommand
-
- MergeVirtualStoresCommand - Class in de.mpg.biochem.mars.molecule.commands
-
- MergeVirtualStoresCommand() - Constructor for class de.mpg.biochem.mars.molecule.commands.MergeVirtualStoresCommand
-
- messageLabel - Variable in class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.AbstractMoleculeArchiveDialog
-
- metadata() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Convenience method to retrieve a metadata stream.
- metadata() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Convenience method to retrieve a metadata stream.
- METADATA_SUBDIRECTORY_NAME - Static variable in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
-
- metadataHasTag(String, String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Check if a MarsMetadata record has a tag.
- metadataHasTag(String, String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Check if a MARSImageMetadata record has a tag.
- metadataMap - Variable in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Map from metadata UID to MarsMetadata object.
- microscope - Variable in class de.mpg.biochem.mars.metadata.AbstractMarsMetadata
-
- Microscope - Variable in class de.mpg.biochem.mars.metadata.OLDMarsMetadata
-
- min(String) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Finds the minimum of the column values.
- min(String, String, double, double) - Method in class de.mpg.biochem.mars.table.MarsTable
-
Finds the min of the values for the maxColumn within the range given for a
rowSelectionColumn (inclusive of bounds).
- Molecule - Interface in de.mpg.biochem.mars.molecule
-
Molecule records act as the storage location for molecule properties.
- MOLECULE_ARCHIVE_ENDING - Static variable in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage
-
- MOLECULE_ARCHIVE_STORE_ENDING - Static variable in interface de.mpg.biochem.mars.io.MoleculeArchiveStorage
-
- MoleculeArchive<M extends Molecule,I extends MarsMetadata,P extends MoleculeArchiveProperties<M,I>,X extends MoleculeArchiveIndex<M,I>> - Interface in de.mpg.biochem.mars.molecule
-
MoleculeArchives are the primary storage structure of Mars datasets.
- MoleculeArchiveAmazonS3KeyValueAccess - Class in de.mpg.biochem.mars.io
-
- MoleculeArchiveAmazonS3KeyValueAccess(AmazonS3, String) - Constructor for class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3KeyValueAccess
-
Opens an AmazonS3 client and a given bucket name.
- MoleculeArchiveAmazonS3Source - Class in de.mpg.biochem.mars.io
-
- MoleculeArchiveAmazonS3Source(AmazonS3, String) - Constructor for class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
-
Opens an
If the bucket does not exist, it will not be created and
all subsequent attempts to read attributes, groups, or datasets will fail.
- MoleculeArchiveAmazonS3Source(AmazonS3, AmazonS3URI) - Constructor for class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
-
Opens an
If the bucket and/or container does not exist, it will not be created and
all subsequent attempts to read attributes, groups, or datasets will fail.
- MoleculeArchiveAmazonS3Source(AmazonS3, String, String) - Constructor for class de.mpg.biochem.mars.io.MoleculeArchiveAmazonS3Source
-
Opens an
If the bucket and/or container does not exist, it will not be created and
all subsequent attempts to read attributes, groups, or datasets will fail.
- MoleculeArchiveFSSource - Class in de.mpg.biochem.mars.io
-
- MoleculeArchiveFSSource(File) - Constructor for class de.mpg.biochem.mars.io.MoleculeArchiveFSSource
-
Use to read from an archive or create one.
- MoleculeArchiveFSSource(String) - Constructor for class de.mpg.biochem.mars.io.MoleculeArchiveFSSource
-
Use to read from an archive or create one.
- MoleculeArchiveIndex<M extends Molecule,I extends MarsMetadata> - Interface in de.mpg.biochem.mars.molecule
-
- MoleculeArchiveIOFactory - Class in de.mpg.biochem.mars.io
-
- MoleculeArchiveIOFactory() - Constructor for class de.mpg.biochem.mars.io.MoleculeArchiveIOFactory
-
- MoleculeArchiveIOPlugin - Class in de.mpg.biochem.mars.molecule
-
- MoleculeArchiveIOPlugin() - Constructor for class de.mpg.biochem.mars.molecule.MoleculeArchiveIOPlugin
-
- MoleculeArchiveOpenDialog - Class in de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector
-
- MoleculeArchiveOpenDialog(String, Context) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveOpenDialog
-
- MoleculeArchiveOpenDialog(Context) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveOpenDialog
-
- MoleculeArchivePostprocessor - Class in de.mpg.biochem.mars.molecule
-
- MoleculeArchivePostprocessor() - Constructor for class de.mpg.biochem.mars.molecule.MoleculeArchivePostprocessor
-
- MoleculeArchivePreprocessor - Class in de.mpg.biochem.mars.molecule
-
- MoleculeArchivePreprocessor() - Constructor for class de.mpg.biochem.mars.molecule.MoleculeArchivePreprocessor
-
- MoleculeArchiveProperties<M extends Molecule,I extends MarsMetadata> - Interface in de.mpg.biochem.mars.molecule
-
Global properties of Molecule Archives are stored in
MoleculeArchiveProperties including comments, number of each record type, as
well as tag, parameter, Table column, region and position name indexes.
- MoleculeArchiveSaveDialog - Class in de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector
-
- MoleculeArchiveSaveDialog(String, Context) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSaveDialog
-
- MoleculeArchiveSaveDialog(Context) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSaveDialog
-
- MoleculeArchiveSelection - Class in de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector
-
- MoleculeArchiveSelection(String) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSelection
-
- MoleculeArchiveService - Class in de.mpg.biochem.mars.molecule
-
- MoleculeArchiveService() - Constructor for class de.mpg.biochem.mars.molecule.MoleculeArchiveService
-
- MoleculeArchiveSource - Interface in de.mpg.biochem.mars.io
-
Basic interface for
- MoleculeArchiveStorage - Interface in de.mpg.biochem.mars.io
-
Location where Molecule Archives are stored.
- MoleculeArchiveSwingTreeNode - Class in de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector
-
- MoleculeArchiveSwingTreeNode(String) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode
-
- MoleculeArchiveSwingTreeNode(String, DefaultTreeModel) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode
-
- MoleculeArchiveSwingTreeNode(String, MoleculeArchiveSwingTreeNode) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode
-
- MoleculeArchiveSwingTreeNode(String, MoleculeArchiveSwingTreeNode, DefaultTreeModel) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveSwingTreeNode
-
- MoleculeArchiveTreeCellRenderer - Class in de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector
-
- MoleculeArchiveTreeCellRenderer(boolean) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeCellRenderer
-
- MoleculeArchiveTreeNode - Class in de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector
-
A node representing a dataset or group in a container
and child nodes if any exist.
- MoleculeArchiveTreeNode(String) - Constructor for class de.mpg.biochem.mars.swingUI.MoleculeArchiveSelector.MoleculeArchiveTreeNode
-
- MoleculeArchiveWidget - Class in de.mpg.biochem.mars.molecule
-
Swing implementation of multiple choice selector widget for MoleculeArchive
selection.
- MoleculeArchiveWidget() - Constructor for class de.mpg.biochem.mars.molecule.MoleculeArchiveWidget
-
- MoleculeArchiveWindow - Interface in de.mpg.biochem.mars.molecule
-
This interface must be implemented by Mars GUIs that provide MoleculeArchive
windows with access to archive information.
- moleculeDataTableColumnSet - Variable in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties
-
- moleculeHasNoTags(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Check if a molecule record has a tag.
- moleculeHasNoTags(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Check if a molecule record has no tags.
- moleculeHasTag(String, String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Check if a molecule record has a tag.
- moleculeHasTag(String, String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Check if a molecule record has a tag.
- moleculeHasTags(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Check if a molecule record has tags.
- moleculeHasTags(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Check if a molecule record has tags.
- MoleculeIntegratorCommand - Class in de.mpg.biochem.mars.image.commands
-
Command for integrating the fluorescence signal from peaks.
- MoleculeIntegratorCommand() - Constructor for class de.mpg.biochem.mars.image.commands.MoleculeIntegratorCommand
-
- MoleculeIntegratorMultiViewCommand - Class in de.mpg.biochem.mars.image.commands
-
Command for integrating the fluorescence signal from spot.
- MoleculeIntegratorMultiViewCommand() - Constructor for class de.mpg.biochem.mars.image.commands.MoleculeIntegratorMultiViewCommand
-
- moleculeMap - Variable in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Map from molecule UID to Molecule object.
- molecules() - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Convenience method to retrieve a Molecule stream.
- molecules() - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Convenience method to retrieve a Molecule stream.
- MOLECULES_SUBDIRECTORY_NAME - Static variable in interface de.mpg.biochem.mars.io.MoleculeArchiveSource
-
- moleculeSegmentTableNames - Variable in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchiveProperties
-
- moleculeTags(String) - Method in class de.mpg.biochem.mars.molecule.AbstractMoleculeArchive
-
Retrieve the list of tags for a molecule.
- moleculeTags(String) - Method in interface de.mpg.biochem.mars.molecule.MoleculeArchive
-
Retrieve the list of tags for a molecule.
- MotionBlurForceCalculator - Class in de.mpg.biochem.mars.util
-
- MotionBlurForceCalculator(double, double, double, double) - Constructor for class de.mpg.biochem.mars.util.MotionBlurForceCalculator
-
- MotionBlurForceCalculator(double, double, double, double, double) - Constructor for class de.mpg.biochem.mars.util.MotionBlurForceCalculator
-